Browse Element(s) Details


OsAffx.17195.1.S1_at

Description tigr:9636.m02738
TID=OsAffx.17195.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2770011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27650NANA8+16716705..16720051transposon protein, putative, unclassified
LOC_Os08g27660OsAffx.22023.1.S1_x_at11/118+16729654..16730043hypothetical protein
LOC_Os08g27660OsAffx.22023.1.S1_at11/118+16729654..16730043hypothetical protein
LOC_Os08g27674OsAffx.17193.2.S1_s_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.17193.1.S1_x_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.1225.1.S1_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.17193.2.S1_x_at10/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.8371.1.S1_at1/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.8372.1.S1_at1/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27690OsAffx.22022.1.S1_at2/118+16739537..16739791hypothetical protein
LOC_Os08g27700OsAffx.17195.1.S1_at11/118+16740754..16743564expressed protein
LOC_Os08g27700Os.26894.1.A1_at9/118+16740754..16743564expressed protein
LOC_Os08g27700Os.26894.1.A1_x_at8/118+16740754..16743564expressed protein
LOC_Os08g27710OsAffx.29383.1.S1_x_at1/118+16749942..16750418hypothetical protein
LOC_Os08g27720Os.12420.1.S1_at10/118+16759520..16763514Pirin, putative, expressed
LOC_Os08g27730OsAffx.22021.1.S1_at11/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27730OsAffx.9516.1.S1_at3/118+16767310..16771221retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17195.1.S1_at--392--7971Chr08:16741994..16742018 (25 bp)
GGATCCCAGCTCCTATGGAGAATGT
LOC_Os08g27700
OsAffx.17195.1.S1_at--924--8571Chr08:16741962..16741986 (25 bp)
TGGTTGTCAATTGTCCTCCTGAAGA
LOC_Os08g27700
OsAffx.17195.1.S1_at--251--191Chr08:16741922..16741946 (25 bp)
ATCTTCTGACAACCGCCGTAGAATT
LOC_Os08g27700
OsAffx.17195.1.S1_at--857--3851Chr08:16741888..16741912 (25 bp)
CTGAGTTCTGGATCATACGCCACAA
LOC_Os08g27700
OsAffx.17195.1.S1_at--125--5151Chr08:16741846..16741870 (25 bp)
GCAACCATAGTAGCATTCACCGGAG
LOC_Os08g27700
OsAffx.17195.1.S1_at--689--2631Chr08:16741820..16741844 (25 bp)
AACCTCCAGGTCATGCAAGGCGATG
LOC_Os08g27700
OsAffx.17195.1.S1_at--963--2711Chr08:16741771..16741795 (25 bp)
AAGCAGCATGTTGAGTCGTCCGCAG
LOC_Os08g27700
OsAffx.17195.1.S1_at--212--7971Chr08:16740874..16740898 (25 bp)
GGATCTTCCGATCCACAACAATGCC
LOC_Os08g27700
OsAffx.17195.1.S1_at--604--4391Chr08:16740852..16740876 (25 bp)
GCCAATACTGGAACACTTTGCCTGA
LOC_Os08g27700
OsAffx.17195.1.S1_at--1133--2031Chr08:16740838..16740862 (25 bp)
ACTTTGCCTGAATCTGGAGTATCCA
LOC_Os08g27700
OsAffx.17195.1.S1_at--960--4351Chr08:16740808..16740832 (25 bp)
CCACCCGCATAGACACTTTCAAATT
LOC_Os08g27700
Target Sequence 
GGATCCCAGCTCCTATGGAGAATGTGGTAAGGTGGTTGTCAATTGTCCTCCTGAAGATCCTGCCCCAGTGTCATCTTCTG
ACAACCGCCGTAGAATTTTAAGAGCACTGAGTTCTGGATCATACGCCACAAAGATAAAGAACACAAGAGCAACCATAGTA
GCATTCACCGGAGCAACCTCCAGGTCATGCAAGGCGATGAGTCATGATTCAAGTGGTTCAACCAAGCAGCATGTTGAGTC
GTCCGCAGGNNAGAGNANANNNCAAANNNNANNNGTTGAGTTTCACATATATGGACAATATGGGCAAAAGTATTCATATG
AAAGAATAGTAGGATCACAATGCAGACATGAGAAGGTATTCAGTCATCATATGAACAGTGAGGAGAAGCAGTACAGCCAA
CATCAAAAGGATCTTCCGATCCACAACAATGCCAATACTGGAACACTTTGCCTGAATCTGGAGTATCCAGAGTCCCACCC
GCATAGACACTTTCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis