Browse Element(s) Details


OsAffx.19810.1.S1_x_at

Description gb:NM_188881.1
DB_XREF= gi:34904845
GEN=OJ1484_G09.16
TID=OsAffx.19810.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1484_G09.16 (OJ1484_G09.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2774011/11transposon protein, putative, unclassified
LOC_Os12g248703/11SWIM zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27710OsAffx.29383.1.S1_x_at1/118+16749942..16750418hypothetical protein
LOC_Os08g27720Os.12420.1.S1_at10/118+16759520..16763514Pirin, putative, expressed
LOC_Os08g27730OsAffx.22021.1.S1_at11/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27730OsAffx.9516.1.S1_at3/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.4.S1_s_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.1.S1_x_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.2.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.9835.1.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27759OsAffx.17196.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.3.S1_x_at5/118+16778875..16784124expressed protein
LOC_Os08g27780OsAffx.9832.1.S1_x_at11/118+16786213..16787250Protein kinase domain containing protein, expressed
LOC_Os08g27790NANA8+16794670..16797680retrotransposon protein, putative, unclassified
LOC_Os08g27800NANA8+16798779..16804382retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009585biological_processred, far-red light phototransduction
GO:0009639biological_processresponse to red or far red light
GO:0010017biological_processred or far red light signaling pathway
GO:0010018biological_processfar red light signaling pathway
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19810.1.S1_x_at--789--1271Chr08:16775820..16775844 (25 bp)
AGATCAGTTTCTATCAGATTGGCAA
LOC_Os08g27740
OsAffx.19810.1.S1_x_at--1056--6312Chr12:14254123..14254147 (25 bp)
GATGAATATGACCTCCATGGAAACC
NONE
OsAffx.19810.1.S1_x_at--882--5572Chr12:14254177..14254201 (25 bp)
GAAATGTGGGCTCCGGTATACTTTA
NONE
OsAffx.19810.1.S1_x_at--414--6571Chr08:16776016..16776040 (25 bp)
GATTCAGTGTGGATCTTTGTCAAAC
LOC_Os08g27740
OsAffx.19810.1.S1_x_at--702--8332Chr12:14258036..14258059 (24 bp)
GGCTGTCCTTAACATCCATGAGATT
LOC_Os12g24870
OsAffx.19810.1.S1_x_at--503--8872Chr12:14258114..14258138 (25 bp)
TGATGAGTACAATGGTCCAGCACCA
LOC_Os12g24870
OsAffx.19810.1.S1_x_at--526--1511Chr08:16776650..16776674 (25 bp)
AGCACCATCAATTGGAGTCCCGGCA
LOC_Os08g27740
OsAffx.19810.1.S1_x_at--675--1131Chr08:16776665..16776689 (25 bp)
AGTCCCGGCAACAAGCAAGCTGAGA
LOC_Os08g27740
OsAffx.19810.1.S1_x_at--987--2192Chr12:14258196..14258219 (24 bp)
ACAAGCCTTGCTTCAGATGCATGTG
LOC_Os12g24870
OsAffx.19810.1.S1_x_at--1112--7011Chr08:16776752..16776776 (25 bp)
GTACTTGATTGTTTCAGCTGGGATT
LOC_Os08g27740
OsAffx.19810.1.S1_x_at--340--1611Chr08:16776767..16776791 (25 bp)
AGCTGGGATTCAGAACCTACACGCA
LOC_Os08g27740
Target Sequence 
AGATCAGTTTCTATCAGATTGGCAAAAAATGGTAGATGAATATGACCTCCATGGAAACCAAACTTTGAATAACTTGTGGG
AAACAAAAGAAATGTGGGCTCCGGTATACTTTAACACAAGTTTTTTCCCTTTTACTGGGACGACAGGGAGATCAGAAGGT
CTAAATGGACTATTCAAATTATTTGTACACCCACAAGATTCAGTGTGGATCTTTGTCAAACAATATGAGCATATAATTGA
GACAAGGCTTGACAGAGAGGACAGGGAGGGCTACAGAGTAGAGACAACAGAACCTAGAATGTATTCAAGGGTGATGGCTG
TCCTTAACATCCATGAGATTCCAAGTAAGTACTTGCTGAAATGGTGGTCAGAGCAAGCGACATTGCAAATACGTGATGAG
TACAATGGTCCAGCACCATCAATTGGAGTCCCGGCAACAAGCAAGCTGAGATTCAACGCATTATGCAGGGCAATGACAAG
CCTTGCTTCAGATGCATGTGTTAATGAGGAAAAGTACTTGATTGTTTCAGCTGGGATTCAGAACCTACACGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19810.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis