Browse Element(s) Details


OsAffx.9835.1.S1_at

Description gb:NM_188880.1
DB_XREF= gi:34904843
GEN=OJ1484_G09.15
TID=OsAffx.9835.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1484_G09.15 (OJ1484_G09.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2774011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27710OsAffx.29383.1.S1_x_at1/118+16749942..16750418hypothetical protein
LOC_Os08g27720Os.12420.1.S1_at10/118+16759520..16763514Pirin, putative, expressed
LOC_Os08g27730OsAffx.22021.1.S1_at11/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27730OsAffx.9516.1.S1_at3/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.4.S1_s_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.1.S1_x_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.2.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.9835.1.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27759OsAffx.17196.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.3.S1_x_at5/118+16778875..16784124expressed protein
LOC_Os08g27780OsAffx.9832.1.S1_x_at11/118+16786213..16787250Protein kinase domain containing protein, expressed
LOC_Os08g27790NANA8+16794670..16797680retrotransposon protein, putative, unclassified
LOC_Os08g27800NANA8+16798779..16804382retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9835.1.S1_at--45--8092Chr08:16773256..16773280 (25 bp)
GGAGCCCTAGCAGCTACAAACGCCT
LOC_Os08g27740
OsAffx.9835.1.S1_at--427--4511Chr08:16773292..16773316 (25 bp)
GCCGAGATGCAGATCCCGCAGGTGA
LOC_Os08g27740
OsAffx.9835.1.S1_at--542--651Chr08:16773298..16773322 (25 bp)
ATGCAGATCCCGCAGGTGAGATTCG
LOC_Os08g27740
OsAffx.9835.1.S1_at--559--551Chr08:16773304..16773328 (25 bp)
ATCCCGCAGGTGAGATTCGGATTCC
LOC_Os08g27740
OsAffx.9835.1.S1_at--205--111Chr08:16773318..16773342 (25 bp)
ATTCGGATTCCGATCGCATTCGTGA
LOC_Os08g27740
OsAffx.9835.1.S1_at--144--6591Chr08:16773323..16773347 (25 bp)
GATTCCGATCGCATTCGTGAGGAAA
LOC_Os08g27740
OsAffx.9835.1.S1_at--330--8151Chr08:16773350..16773374 (25 bp)
GGAAATGCAGAGCAGTCACCGCTCC
LOC_Os08g27740
OsAffx.9835.1.S1_at--73--5051Chr08:16773356..16773380 (25 bp)
GCAGAGCAGTCACCGCTCCGACGAG
LOC_Os08g27740
OsAffx.9835.1.S1_at--834--6111Chr08:16773378..16773402 (25 bp)
GAGGGGTCTTACCAAGAAAGCTCAA
LOC_Os08g27740
OsAffx.9835.1.S1_at--891--4831Chr08:16773397..16773421 (25 bp)
GCTCAAGACAGTATATATCTCGGGT
LOC_Os08g27740
OsAffx.9835.1.S1_at--663--231Chr08:16773411..16773435 (25 bp)
ATATCTCGGGTGGACGGATTCCCGC
LOC_Os08g27740
Target Sequence 
GGAGCCCTAGCAGCTACAAACGCCTCTCACCAATCGGCCGAGATGCAGATCCCGCAGGTGAGATTCGGATTCCGATCGCA
TTCGTGAGGAAAGGGGAAATGCAGAGCAGTCACCGCTCCGACGAGGGGTCTTACCAAGAAAGCTCAAGACAGTATATATC
TCGGGTGGACGGATTCCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis