Browse Element(s) Details


OsAffx.19810.4.S1_s_at

Description tigr:9640.m02364
TID=OsAffx.19810.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2774011/11transposon protein, putative, unclassified
LOC_Os12g2481011/11hypothetical protein
LOC_Os01g285801/11expressed protein
LOC_Os09g159801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27710OsAffx.29383.1.S1_x_at1/118+16749942..16750418hypothetical protein
LOC_Os08g27720Os.12420.1.S1_at10/118+16759520..16763514Pirin, putative, expressed
LOC_Os08g27730OsAffx.22021.1.S1_at11/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27730OsAffx.9516.1.S1_at3/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.4.S1_s_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.1.S1_x_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.2.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.9835.1.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27759OsAffx.17196.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.3.S1_x_at5/118+16778875..16784124expressed protein
LOC_Os08g27780OsAffx.9832.1.S1_x_at11/118+16786213..16787250Protein kinase domain containing protein, expressed
LOC_Os08g27790NANA8+16794670..16797680retrotransposon protein, putative, unclassified
LOC_Os08g27800NANA8+16798779..16804382retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009639biological_processresponse to red or far red light
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19810.4.S1_s_at--742--2193Chr12:14239481..14239505 (25 bp)
ACACACGCATCCGATGGTGAAGCGC
LOC_Os12g24810
OsAffx.19810.4.S1_s_at--379--3353Chr12:14239484..14239508 (25 bp)
CACGCATCCGATGGTGAAGCGCCTT
LOC_Os12g24810
OsAffx.19810.4.S1_s_at--791--3695Chr12:14239556..14239580 (25 bp)
CTATGAATTTCTAAAGACTTTGCAT
LOC_Os12g24810
OsAffx.19810.4.S1_s_at--667--2073Chr12:14239588..14239612 (25 bp)
ACATTGCAACATCGCAGATTTTGGC
LOC_Os12g24810
OsAffx.19810.4.S1_s_at--606--3273Chr12:14239594..14239618 (25 bp)
CAACATCGCAGATTTTGGCGTTGTT
LOC_Os12g24810
OsAffx.19810.4.S1_s_at--994--5033Chr12:14239601..14239625 (25 bp)
GCAGATTTTGGCGTTGTTAGGAGAT
LOC_Os12g24810
OsAffx.19810.4.S1_s_at--777--10233Chr12:14239607..14239631 (25 bp)
TTTGGCGTTGTTAGGAGATTTGCAC
LOC_Os12g24810
OsAffx.19810.4.S1_s_at--485--212Chr12:14239675..14239699 (25 bp)
ATTTGAGGACAAAACTGAGACAACA
LOC_Os12g24810
OsAffx.19810.4.S1_s_at--1014--2552Chr12:14239687..14239711 (25 bp)
AACTGAGACAACAAGTTTCACTCAA
LOC_Os12g24810
OsAffx.19810.4.S1_s_at--675--6833Chr12:14239701..14239725 (25 bp)
GTTTCACTCAAAGATGTTGCAATGA
LOC_Os12g24810
OsAffx.19810.4.S1_s_at--236--6293Chr12:14239713..14239737 (25 bp)
GATGTTGCAATGACTATTGATTATT
LOC_Os12g24810
Target Sequence 
ACACACGCATCCGATGGTGAAGCGCCTTAGAAGAAGGAGATATTATAGATCTCACAGGCACATCTCAAATGAATACTATG
AATTTCTAAAGACTTTGCATGATCGAAACATTGCAACATCGCAGATTTTGGCGTTGTTAGGAGATTTGCACGGTGGTGTG
AGGAATCTAACTTTCACTGTTAAAGATGTCTCAAATTTGAGGACAAAACTGAGACAACAAGTTTCACTCAAAGATGTTGC
AATGACTATTGATTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19810.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis