Browse Element(s) Details


OsAffx.17196.1.S1_at

Description gb:NM_188884.1
DB_XREF= gi:34904851
GEN=OJ1484_G09.19
TID=OsAffx.17196.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1484_G09.19 (OJ1484_G09.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2775911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27720Os.12420.1.S1_at10/118+16759520..16763514Pirin, putative, expressed
LOC_Os08g27730OsAffx.22021.1.S1_at11/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27730OsAffx.9516.1.S1_at3/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.4.S1_s_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.1.S1_x_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.19810.2.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27740OsAffx.9835.1.S1_at11/118+16772948..16776833transposon protein, putative, unclassified
LOC_Os08g27759OsAffx.17196.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.1.S1_at11/118+16778875..16784124expressed protein
LOC_Os08g27759OsAffx.29384.3.S1_x_at5/118+16778875..16784124expressed protein
LOC_Os08g27780OsAffx.9832.1.S1_x_at11/118+16786213..16787250Protein kinase domain containing protein, expressed
LOC_Os08g27790NANA8+16794670..16797680retrotransposon protein, putative, unclassified
LOC_Os08g27800NANA8+16798779..16804382retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27810OsAffx.29386.2.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_x_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17196.1.S1_at--310--5351Chr08:16784053..16784077 (25 bp)
GAAGAGCACGGTTCAAGAGATTAGA
LOC_Os08g27759
OsAffx.17196.1.S1_at--205--6671Chr08:16784016..16784040 (25 bp)
GTTGAAGAATTTAAGCAGGCTGATC
LOC_Os08g27759
OsAffx.17196.1.S1_at--440--5011Chr08:16784002..16784026 (25 bp)
GCAGGCTGATCATATGTTGCTCATT
LOC_Os08g27759
OsAffx.17196.1.S1_at--266--4751Chr08:16783998..16784022 (25 bp)
GCTGATCATATGTTGCTCATTTTGA
LOC_Os08g27759
OsAffx.17196.1.S1_at--961--3571Chr08:16783992..16784016 (25 bp)
CATATGTTGCTCATTTTGAGGGAGA
LOC_Os08g27759
OsAffx.17196.1.S1_at--1119--6311Chr08:16783957..16783981 (25 bp)
GATGAAGCTCATGCTAGTTGGTGGT
LOC_Os08g27759
OsAffx.17196.1.S1_at--490--7331Chr08:16783798..16783822 (25 bp)
GTGAAACTTTTGAAATGGTAATGTC
LOC_Os08g27759
OsAffx.17196.1.S1_at--611--2971Chr08:16783785..16783809 (25 bp)
AATGGTAATGTCAGGTTTGCAGTCT
LOC_Os08g27759
OsAffx.17196.1.S1_at--779--3471Chr08:16783774..16783798 (25 bp)
CAGGTTTGCAGTCTTTAGTACATTT
LOC_Os08g27759
OsAffx.17196.1.S1_at--925--9031Chr08:16783768..16783792 (25 bp)
TGCAGTCTTTAGTACATTTGTCATC
LOC_Os08g27759
OsAffx.17196.1.S1_at--442--7151Chr08:16783764..16783788 (25 bp)
GTCTTTAGTACATTTGTCATCTGAA
LOC_Os08g27759
Target Sequence 
GAAGAGCACGGTTCAAGAGATTAGAAAAGATGCAGATGTTGAAGAATTTAAGCAGGCTGATCATATGTTGCTCATTTTGA
GGGAGATGATGGTGATGATGAAGCTCATGCTAGTTGGTGGTGNNNNNNCANNNNGTNTNNNNNTNNNNNGTNNNNNGAGA
TGTGAAACTTTTGAAATGGTAATGTCAGGTTTGCAGTCTTTAGTACATTTGTCATCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis