Browse Element(s) Details


OsAffx.11852.2.S1_at

Description tigr:9629.m07443
TID=OsAffx.11852.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1092011/11Peptide-N4-asparagine amidase A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10870OsAffx.11003.1.S1_s_at11/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.11003.2.S1_at9/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.9832.1.S1_x_at1/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10880NANA1+5804847..5805142expressed protein
LOC_Os01g10890Os.1411.1.S1_at11/111+5806391..5808419CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10900Os.33454.1.S1_at11/111+5811629..5816009Leucine Rich Repeat family protein, expressed
LOC_Os01g10910Os.43764.1.A1_at5/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.7.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.2.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.3.S1_x_at1/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10920OsAffx.11852.2.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_x_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10930Os.32657.1.S1_at11/111+5825355..5827630Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10940NANA1+5830415..5830909S-adenosylmethionine synthetase 1, putative
LOC_Os01g10950Os.14564.1.S1_at11/111+5834398..5836700Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10960Os.34020.2.S1_at4/111+5838538..5840376Peptide-N4-asparagine amidase A, putative
LOC_Os01g10970OsAffx.22124.3.S1_s_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.2.S1_x_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.1.S1_x_at1/111+5841504..5845747Integral membrane protein DUF6 containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11852.2.S1_at--1053--2191Chr01:5821794..5821813 (20 bp)
ACAAAATCTCTCATGTAAAGAGCAA
LOC_Os01g10920
OsAffx.11852.2.S1_at--610--1491Chr01:5821154..5821178 (25 bp)
AGCAAAGAACGAAGACTCACATATC
LOC_Os01g10920
OsAffx.11852.2.S1_at--645--5371Chr01:5821144..5821168 (25 bp)
GAAGACTCACATATCATGATTCACA
LOC_Os01g10920
OsAffx.11852.2.S1_at--239--6571Chr01:5821127..5821151 (25 bp)
GATTCACATATCAACCGATTACCGG
LOC_Os01g10920
OsAffx.11852.2.S1_at--390--251Chr01:5821120..5821144 (25 bp)
ATATCAACCGATTACCGGCTCTGCA
LOC_Os01g10920
OsAffx.11852.2.S1_at--167--151Chr01:5821110..5821134 (25 bp)
ATTACCGGCTCTGCACCTATGGAAT
LOC_Os01g10920
OsAffx.11852.2.S1_at--151--8331Chr01:5821104..5821128 (25 bp)
GGCTCTGCACCTATGGAATGGTAAT
LOC_Os01g10920
OsAffx.11852.2.S1_at--332--8211Chr01:5821090..5821114 (25 bp)
GGAATGGTAATCTTCATCCCAATCA
LOC_Os01g10920
OsAffx.11852.2.S1_at--690--7831Chr01:5821085..5821109 (25 bp)
GGTAATCTTCATCCCAATCAGTCGC
LOC_Os01g10920
OsAffx.11852.2.S1_at--220--10631Chr01:5821053..5821077 (25 bp)
TTCGCATGGCATGATCAGAGTCTTG
LOC_Os01g10920
OsAffx.11852.2.S1_at--389--3431Chr01:5820704..5821062 (25 bp)
CAGAGTCTTGGAGATTCGGAGAGTT
LOC_Os01g10920
Target Sequence 
ACAAAATCTCTCATGTAAAGAGCAAAGAACGAAGACTCACATATCATGATTCACATATCAACCGATTACCGGCTCTGCAC
CTATGGAATGGTAATCTTCATCCCAATCAGTCGCCCGCCCCTTCGCATGGCATGATCAGAGTCTTGGAGATTCGGAGAGT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11852.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis