Browse Element(s) Details


Os.34020.2.S1_at

Description gb:CB678541
DB_XREF= gi:29682266
DB_XREF=OSJNEe16L10.r
CLONE=OSJNEe16L10
TID=Os.34020.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.34020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0016I09.10 (OSJNBa0016I09.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g109604/11Peptide-N4-asparagine amidase A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10900Os.33454.1.S1_at11/111+5811629..5816009Leucine Rich Repeat family protein, expressed
LOC_Os01g10910Os.43764.1.A1_at5/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.7.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.2.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.3.S1_x_at1/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10920OsAffx.11852.2.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_x_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10930Os.32657.1.S1_at11/111+5825355..5827630Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10940NANA1+5830415..5830909S-adenosylmethionine synthetase 1, putative
LOC_Os01g10950Os.14564.1.S1_at11/111+5834398..5836700Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10960Os.34020.2.S1_at4/111+5838538..5840376Peptide-N4-asparagine amidase A, putative
LOC_Os01g10970OsAffx.22124.3.S1_s_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.2.S1_x_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.1.S1_x_at1/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10980OsAffx.22124.1.S1_at11/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10980OsAffx.22124.1.S1_x_at11/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10980OsAffx.22124.2.S1_x_at1/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.30989.1.S1_at11/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.7779.1.S1_x_at1/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g11000OsAffx.1284.1.S1_at11/111+5862191..5866284transposon protein, putative, unclassified
LOC_Os01g11000Os.54966.1.S1_at2/111+5862191..5866284transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34020.2.S1_at--951--1391Chr01:5838716..5838740 (25 bp)
AGACGTACAGGCTCGAGGCCACCGA
LOC_Os01g10960
Os.34020.2.S1_at--98--5751Chr01:5838693..5838717 (25 bp)
GACGGCTGCTACTTCAGGAACGTGA
LOC_Os01g10960
Os.34020.2.S1_at--853--6151Chr01:5838630..5838654 (25 bp)
GAGGTTTGCTCGGATTCCCAGGAAT
LOC_Os01g10960
Os.34020.2.S1_at--801--71Chr01:5838617..5838641 (25 bp)
ATTCCCAGGAATATCCAGCCGGTGG
LOC_Os01g10960
Os.34020.2.S1_at--169--5911Chr01:5838531..5838555 (25 bp)
GAGCTCGTCAGGAAGTGATCACTAC
NONE
Os.34020.2.S1_at--45--8851Chr01:5838516..5838540 (25 bp)
TGATCACTACTAATCGCACACTGGC
NONE
Os.34020.2.S1_at--683--6891Chr01:5838475..5838499 (25 bp)
GTATAGCCTGCCAAACCAAAATTAT
NONE
Os.34020.2.S1_at--724--7951Chr01:5838415..5838439 (25 bp)
GGATCACGAGCCCAAGTTCCGATTC
NONE
Os.34020.2.S1_at--958--6691Chr01:5838400..5838424 (25 bp)
GTTCCGATTCGTTTTGTTTCATGCA
NONE
Os.34020.2.S1_at--144--3191Chr01:5838377..5838401 (25 bp)
CAATTTATGGGCTTCACACCACGCG
NONE
Os.34020.2.S1_at--1123--3331Chr01:5838358..5838382 (25 bp)
CACGCGCCGAAGTTAGGTCTGGTTT
NONE
Target Sequence 
AGACGTACAGGCTCGAGGCCACCGACGGCTGCTACTTCAGGAACGTGACGAGCAGCGGGTACAGCGTAGCGTCCGACGAG
TCCGACGAGGTTTGCTCGGATTCCCAGGAATATCCAGCCGGTGGCGCCGTCATCGGGGCGCTGCCGCCGGCGGAGGCGGC
GGCGGCGGTGACAGCAAGCGCCGACGAGCTCGTCAGGAAGTGATCACTACTAATCGCACACTGGCAGTGATAGTTGGTGG
GGTATAGCCTGCCAAACCAAAATTATTGGTGGGCTCAAATGCGAAGCAACGGACAACAACTGGATCACGAGCCCAAGTTC
CGATTCGTTTTGTTTCATGCAATTTATGGGCTTCACACCACGCGCCGAAGTTAGGTCTGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34020.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis