Browse Element(s) Details


Os.54966.1.S1_at

Description gb:AK107208.1
DB_XREF= gi:32992417
TID=Os.54966.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-B11, full insert sequence.
FL= gb:AK107208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4762011/11IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os01g110002/11transposon protein, putative, unclassified
LOC_Os11g446191/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47580Os.52582.1.S1_at11/116+28805783..28815146ImpB/MucB/SamB family protein, expressed
LOC_Os06g47590OsAffx.5138.1.S1_at11/116+28817164..28818182AP2 domain containing protein, expressed
LOC_Os06g47600Os.6291.1.S1_x_at11/116+28824832..28826005Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47600Os.6291.1.S1_at11/116+28824832..28826005Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47610NANA6+28829642..28830505transposon protein, putative, unclassified
LOC_Os06g47620Os.54966.1.S1_at11/116+28830650..28836130IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os06g47620OsAffx.19893.1.S1_at1/116+28830650..28836130IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os06g47630NANA6+28845114..28845938hypothetical protein
LOC_Os06g47640Os.53014.1.S1_at11/116+28846315..28847024EF hand family protein, expressed
LOC_Os06g47660Os.11189.2.S1_at11/116+28850713..28856262expressed protein
LOC_Os06g47660OsAffx.28159.1.S1_at10/116+28850713..28856262expressed protein
LOC_Os06g47660Os.52494.1.S1_at1/116+28850713..28856262expressed protein
LOC_Os06g47650Os.11189.1.S1_at11/116+28852113..28855938Leucine Rich Repeat family protein, expressed
LOC_Os06g47670OsAffx.28160.1.S1_x_at4/116+28856674..28857261hypothetical protein
LOC_Os06g47670OsAffx.28160.1.S1_at3/116+28856674..28857261hypothetical protein
LOC_Os06g47680OsAffx.10373.1.S1_x_at11/116+28858090..28859394F-box domain containing protein
LOC_Os06g47680OsAffx.10373.1.S1_at11/116+28858090..28859394F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009850biological_processauxin metabolism
GO:0008237molecular_functionmetallopeptidase activity
GO:0010178molecular_functionIAA-amino acid conjugate hydrolase activity
GO:0010179molecular_functionIAA-Ala conjugate hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54966.1.S1_at--1149--4171Chr06:28831206..28831230 (25 bp)
CCCTACTTCATGATCGACGAGGACG
LOC_Os06g47620
Os.54966.1.S1_at--205--9291Chr06:28831095..28831119 (25 bp)
TCCGACGACCCGGATGTCGAGCTGG
LOC_Os06g47620
Os.54966.1.S1_at--517--1071Chr06:28831052..28831076 (25 bp)
AGGGAGCCCGGCAAAGTCAGTCGAT
LOC_Os06g47620
Os.54966.1.S1_at--427--3951Chr06:28831044..28831068 (25 bp)
CGGCAAAGTCAGTCGATCAGCGCGC
LOC_Os06g47620
Os.54966.1.S1_at--275--3911Chr06:28830977..28831001 (25 bp)
CTGGACTGGTGATTTTGGGCCCATT
LOC_Os06g47620
Os.54966.1.S1_at--857--251Chr06:28830928..28830952 (25 bp)
ATAGGGATCGGTGTTTTTGCCCTGC
LOC_Os06g47620
Os.54966.1.S1_at--1091--10392Chr06:28830854..28830878 (25 bp)
TTACTCCCTTAAATGTATACCGAAT
LOC_Os06g47620
Os.54966.1.S1_at--973--97743Chr12:26414650..26414673 (24 bp)
TACCGAATCTAATTCGTACCCCTCA
NONE
Os.54966.1.S1_at--1018--1851Chr06:28830774..28830798 (25 bp)
AACTGGTACAAATAGACTCCCTCGG
LOC_Os06g47620
Os.54966.1.S1_at--988--9835Chr06:25987594..25987618 (25 bp)
TACAAATAGACTCCCTCGGCGGTTT
NONE
Os.54966.1.S1_at--721--68115Chr11:13216716..13216735 (20 bp)
GTTTCAAGGGCGGTTTTGCTGACGT
NONE
Target Sequence 
CCCTACTTCATGATCGACGAGGACGTCCTCCCCACCGGCGCCGCCTTCCACGCCGCCATCGCCGAGCGCTACCTCGCCAA
CCACTCGCCTTCCTCCTCCTCCTCCTCCGACTCCGACGACCCGGATGTCGAGCTGGAGGCGTCGTGACCGAGCAAGGGAG
CCCGGCAAAGTCAGTCGATCAGCGCGCCGCGCCGCGCCGCGGGAGCGCGCCACGCCGGTTGGTGGTGGGCTGGACTGGTG
ATTTTGGGCCCATTTCGCGGTGGGCTTTGTCGCGGGCCATAGGGATCGGTGTTTTTGCCCTGCCATGGGGAAATTTAGGT
GGGAGGGATTAATCTGAGGAAAAAGTCCACTTTTACTCCCTTAAATGTATACCGAATCTAATTCGTACCCCTCAACCAGA
AAACCGGTTAGGATGACTCCCCCAATTACTAAAACTGGTACAAATAGACTCCCTCGGCGGTTTCAAGGGCGGTTTTGCTG
ACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis