Browse Element(s) Details


Os.52582.1.S1_at

Description gb:AK068150.1
DB_XREF= gi:32978168
TID=Os.52582.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169N18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129N20, full insert sequence.
FL= gb:AK100072.1 gb:AK068150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4758011/11ImpB/MucB/SamB family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47544Os.55355.1.S1_x_at9/116+28786766..28787333expressed protein
LOC_Os06g47550Os.18957.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47550OsAffx.28154.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47560OsAffx.28155.1.S1_at11/116+28798019..28798515hypothetical protein
LOC_Os06g47570OsAffx.28156.1.S1_at11/116+28800753..28803728pentatricopeptide, putative, expressed
LOC_Os06g47580Os.52582.1.S1_at11/116+28805783..28815146ImpB/MucB/SamB family protein, expressed
LOC_Os06g47590OsAffx.5138.1.S1_at11/116+28817164..28818182AP2 domain containing protein, expressed
LOC_Os06g47600Os.6291.1.S1_x_at11/116+28824832..28826005Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47600Os.6291.1.S1_at11/116+28824832..28826005Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47610NANA6+28829642..28830505transposon protein, putative, unclassified
LOC_Os06g47620Os.54966.1.S1_at11/116+28830650..28836130IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os06g47620OsAffx.19893.1.S1_at1/116+28830650..28836130IAA-amino acid hydrolase homolog 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006974biological_processresponse to DNA damage stimulus
GO:0010224biological_processresponse to UV-B
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52582.1.S1_at--315--3451Chr06:28806667..28806691 (25 bp)
CAGTCGACCTTTATCTTCTGTTTTA
LOC_Os06g47580
Os.52582.1.S1_at--972--1351Chr06:28806517..28806541 (25 bp)
AGAGCTCCACAAATGTTTCCGGCTT
LOC_Os06g47580
Os.52582.1.S1_at--676--7951Chr06:28806327..28806351 (25 bp)
GGATCAGAGCTTTTCCTGGAATTGC
LOC_Os06g47580
Os.52582.1.S1_at--1002--291Chr06:28806300..28806323 (24 bp)
ATAGCATTCTTCCTCTCTTACAGGA
LOC_Os06g47580
Os.52582.1.S1_at--1128--3091Chr06:28806068..28806092 (25 bp)
AATTAGCCATTTTGCCGTCGAAAGG
LOC_Os06g47580
Os.52582.1.S1_at--784--6651Chr06:28806030..28806054 (25 bp)
GTTGAGATCTTTGCTCCGATTTACC
LOC_Os06g47580
Os.52582.1.S1_at--102--9811Chr06:28805931..28805955 (25 bp)
TAACCATCATGGACTGTTCTCCTGA
LOC_Os06g47580
Os.52582.1.S1_at--271--6731Chr06:28805916..28805940 (25 bp)
GTTCTCCTGATCGTGTTGTCGCTAA
LOC_Os06g47580
Os.52582.1.S1_at--969--8811Chr06:28805903..28805927 (25 bp)
TGTTGTCGCTAATTCCACTTGGATA
LOC_Os06g47580
Os.52582.1.S1_at--516--3311Chr06:28805888..28805912 (25 bp)
CACTTGGATATGGACCGAGCCGGTT
LOC_Os06g47580
Os.52582.1.S1_at--99--9891Chr06:28805791..28805815 (25 bp)
TACATTGACGGCTCTATGCAGGCTG
LOC_Os06g47580
Target Sequence 
CAGTCGACCTTTATCTTCTGTTTTAGAACCTGTAATTTCCTACCTTCCCCTGTGCCCTAACTCAGGCACTGAAGAATGGA
ACGAAGCATTTGCAAGCCTTTCTGAACTTCTGACACAATATATACACCAAAAGGTTGAATCTGATATTGAAGAGCTCCAC
AAATGTTTCCGGCTTTTAAAAAGATTGTCATCAGGATCAGAGCTTTTCCTGGAATTGCACGATAGCATTCTTCCTCTCTT
ACAGGATTCTGTCAGGCAGCATTATGGTGGGATACTACATTTATAGTTTATTGTTCAAGTACAATTAGCCATTTTGCCGT
CGAAAGGGCCAAGAGAACCTGTTGAGATCTTTGCTCCGATTTACCTCAACGGCTAACCATCATGGACTGTTCTCCTGATC
GTGTTGTCGCTAATTCCACTTGGATATGGACCGAGCCGGTTTTTTTGTTGCTGCAAACCTACAAAGTTGTCCTTTATACC
TGTAAATATAACTAGTATTATTACTAGCACTACTACATTGACGGCTCTATGCAGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis