Browse Element(s) Details


OsAffx.28156.1.S1_at

Description tigr:9634.m04635
TID=OsAffx.28156.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4757011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47540OsAffx.28153.1.S1_at10/116+28776683..28778894hypothetical protein
LOC_Os06g47544Os.55355.1.S1_x_at9/116+28786766..28787333expressed protein
LOC_Os06g47550Os.18957.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47550OsAffx.28154.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47560OsAffx.28155.1.S1_at11/116+28798019..28798515hypothetical protein
LOC_Os06g47570OsAffx.28156.1.S1_at11/116+28800753..28803728pentatricopeptide, putative, expressed
LOC_Os06g47580Os.52582.1.S1_at11/116+28805783..28815146ImpB/MucB/SamB family protein, expressed
LOC_Os06g47590OsAffx.5138.1.S1_at11/116+28817164..28818182AP2 domain containing protein, expressed
LOC_Os06g47600Os.6291.1.S1_x_at11/116+28824832..28826005Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47600Os.6291.1.S1_at11/116+28824832..28826005Pathogenesis-related protein 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28156.1.S1_at--175--6511Chr06:28803171..28803195 (25 bp)
GATATTACCTGGCAACTTCTTGAAA
LOC_Os06g47570
OsAffx.28156.1.S1_at--979--5371Chr06:28803203..28803227 (25 bp)
GAAGCATGGACTAAATCCCACCGTA
LOC_Os06g47570
OsAffx.28156.1.S1_at--787--5671Chr06:28803230..28803254 (25 bp)
GACATACAGTTCTCTCATTGCAGGA
LOC_Os06g47570
OsAffx.28156.1.S1_at--118--7311Chr06:28803305..28803329 (25 bp)
GTGCGGAAAAGGTCTATCTCCCAAT
LOC_Os06g47570
OsAffx.28156.1.S1_at--1009--7291Chr06:28803356..28803380 (25 bp)
GTGCTGTTGCGATACCAAGTTCTTT
LOC_Os06g47570
OsAffx.28156.1.S1_at--374--2931Chr06:28803384..28803408 (25 bp)
AAGGCTTTGTCGTTTGTTAGCATCA
LOC_Os06g47570
OsAffx.28156.1.S1_at--1140--1451Chr06:28803413..28803437 (25 bp)
AGAATGTGGCTTTCAACCTCAACTC
LOC_Os06g47570
OsAffx.28156.1.S1_at--251--2551Chr06:28803433..28803457 (25 bp)
AACTCGAGTCCTACAGGCTTCTTGT
LOC_Os06g47570
OsAffx.28156.1.S1_at--318--4911Chr06:28803449..28803473 (25 bp)
GCTTCTTGTGGTAGGCCTTTGTAAT
LOC_Os06g47570
OsAffx.28156.1.S1_at--313--2271Chr06:28803495..28803519 (25 bp)
AAATCTCTGTTCTGTGACTTGCTTG
LOC_Os06g47570
OsAffx.28156.1.S1_at--122--5691Chr06:28803510..28803534 (25 bp)
GACTTGCTTGAACTGGGCTATAATC
LOC_Os06g47570
Target Sequence 
GATATTACCTGGCAACTTCTTGAAAGGATGGTGAAGCATGGACTAAATCCCACCGTAACGACATACAGTTCTCTCATTGC
AGGATTCTGCAAAGCTGGACGTCTTGAAGAAGCATGCCTTCTTCTAGATCATATGTGCGGAAAAGGTCTATCTCCCAATG
AAGACATATACACATTGCTTATCAAGTGCTGTTGCGATACCAAGTTCTTTGAAAAGGCTTTGTCGTTTGTTAGCATCATG
TCAGAATGTGGCTTTCAACCTCAACTCGAGTCCTACAGGCTTCTTGTGGTAGGCCTTTGTAATGAAGGAGACTTTGAGAA
GGTTAAATCTCTGTTCTGTGACTTGCTTGAACTGGGCTATAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis