Browse Element(s) Details


Os.55355.1.S1_x_at

Description gb:AK107925.1
DB_XREF= gi:32993134
TID=Os.55355.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-H08, full insert sequence.
FL= gb:AK107925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g475449/11expressed protein
LOC_Os01g577702/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47500OsAffx.22699.1.S1_x_at2/116+28761362..28761872retrotransposon protein, putative, unclassified
LOC_Os06g47510NANA6+28762056..28765012retrotransposon protein, putative, unclassified
LOC_Os06g47520Os.56282.1.S1_at11/116+28767496..28769448expressed protein
LOC_Os06g47530OsAffx.28152.1.S1_s_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28152.1.S1_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28150.1.S1_x_at1/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47540OsAffx.28153.1.S1_at10/116+28776683..28778894hypothetical protein
LOC_Os06g47544Os.55355.1.S1_x_at9/116+28786766..28787333expressed protein
LOC_Os06g47550Os.18957.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47550OsAffx.28154.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47560OsAffx.28155.1.S1_at11/116+28798019..28798515hypothetical protein
LOC_Os06g47570OsAffx.28156.1.S1_at11/116+28800753..28803728pentatricopeptide, putative, expressed
LOC_Os06g47580Os.52582.1.S1_at11/116+28805783..28815146ImpB/MucB/SamB family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55355.1.S1_x_at--346--3751Chr06:28786919..28786943 (25 bp)
CTCCTCTCAAGATCCGGTGGGTCGG
LOC_Os06g47544
Os.55355.1.S1_x_at--360--3931Chr06:28786954..28786978 (25 bp)
CGGCGCGGCAAGTCAGCGGCTCCAT
LOC_Os06g47544
Os.55355.1.S1_x_at--420--872Chr06:28786977..28787001 (25 bp)
ATGGCGGCGCGGTTGATCTCCGGCG
LOC_Os06g47544
Os.55355.1.S1_x_at--1105--3931Chr06:28787068..28787092 (25 bp)
CGGCGGCTCAGGATCTAGCTCCCGA
LOC_Os06g47544
Os.55355.1.S1_x_at--778--3751Chr06:28787074..28787098 (25 bp)
CTCAGGATCTAGCTCCCGAGCTTGG
LOC_Os06g47544
Os.55355.1.S1_x_at--807--9251Chr06:28787178..28787202 (25 bp)
TCCTCATCTTCTTGTGTTGATATTT
LOC_Os06g47544
Os.55355.1.S1_x_at--1112--8673Chr06:28787190..28787214 (25 bp)
TGTGTTGATATTTTGTCTCGTTGAT
LOC_Os06g47544
Os.55355.1.S1_x_at--652--10211NONE
TATTTTGTCTCGTTGATATTTTGCG
NONE
Os.55355.1.S1_x_at--431--171NONE
ATTTTGCGATGATTCCGATTGGGAT
NONE
Os.55355.1.S1_x_at--921--10252Chr06:28787240..28787264 (25 bp)
TTTGTTTTTGTGTTGGATTGCGATG
LOC_Os06g47544
Os.55355.1.S1_x_at--574--6592Chr06:28787255..28787279 (25 bp)
GATTGCGATGTGATGATTTGGGATT
LOC_Os06g47544
Target Sequence 
CTCCTCTCAAGATCCGGTGGGTCGGCGGCTCCCGACGGCGCGGCAAGTCAGCGGCTCCATGGCGGCGCGGTTGATCTCCG
GCGTAGCGGCGACGCGGCGGCGCGGCAGCTCCCCAGCGCAACGACGCGTCGACGGCTCCCCGGTGGCAGCGGCGGCTCAG
GATCTAGCTCCCGAGCTTGGCACCTCCACGGCAGCGAGGCGGCGAGGTGGTGGTTCGGCGAGGAGCAGCGGCGCCTCCGG
CTCGACCTTCCCTCTCCTCTCCTCATCTTCTTGTGTTGATATTTTGTCTCGTTGATATTTTGCGATGATTCCGATTGGGA
TTTTGTTTTTGTGTTGGATTGCGATGTGATGATTTGGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55355.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis