Browse Element(s) Details

OsAffx.28150.1.S1_x_at

Description

tigr:9634.m04626
TID=OsAffx.28150.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47530	1/11	Protein kinase domain containing protein, expressed
LOC_Os06g47780	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47460	NA	NA	6	+	28741941..28746114	hypothetical protein
LOC_Os06g47470	OsAffx.28152.2.S1_at	11/11	6	+	28749201..28756372	Protein kinase domain containing protein, expressed
LOC_Os06g47480	OsAffx.28151.1.S1_at	11/11	6	+	28757923..28758357	hypothetical protein
LOC_Os06g47490	NA	NA	6	+	28758951..28760043	hypothetical protein
LOC_Os06g47500	OsAffx.22699.1.S1_x_at	2/11	6	+	28761362..28761872	retrotransposon protein, putative, unclassified
LOC_Os06g47510	NA	NA	6	+	28762056..28765012	retrotransposon protein, putative, unclassified
LOC_Os06g47520	Os.56282.1.S1_at	11/11	6	+	28767496..28769448	expressed protein
LOC_Os06g47530	OsAffx.28152.1.S1_s_at	11/11	6	+	28769061..28773426	Protein kinase domain containing protein, expressed
LOC_Os06g47530	OsAffx.28152.1.S1_at	11/11	6	+	28769061..28773426	Protein kinase domain containing protein, expressed
LOC_Os06g47530	OsAffx.28150.1.S1_x_at	1/11	6	+	28769061..28773426	Protein kinase domain containing protein, expressed
LOC_Os06g47540	OsAffx.28153.1.S1_at	10/11	6	+	28776683..28778894	hypothetical protein
LOC_Os06g47544	Os.55355.1.S1_x_at	9/11	6	+	28786766..28787333	expressed protein
LOC_Os06g47550	Os.18957.1.S1_at	11/11	6	+	28788033..28796547	Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47550	OsAffx.28154.1.S1_at	11/11	6	+	28788033..28796547	Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47560	OsAffx.28155.1.S1_at	11/11	6	+	28798019..28798515	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0006952	biological_process	defense response
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28150.1.S1_x_at--508--87	1	NONE	AGGCGTCAAACGTGGCGCAGCTGGT	NONE
OsAffx.28150.1.S1_x_at--205--465	1	NONE	GCGTCAACGCGCTCGGGCTGGTCTC	NONE
OsAffx.28150.1.S1_x_at--926--471	2	Chr06:28917795..28917819 (25 bp)	GCTGGTCTCCATGGTGGTGCAGGCG	LOC_Os06g47780
OsAffx.28150.1.S1_x_at--73--851	1	NONE	TGGCAGTGCGCCTCCACCGGGACGC	NONE
OsAffx.28150.1.S1_x_at--34--151	1	NONE	AGCACGTGGAGCTAGTCTGCTGCCT	NONE
OsAffx.28150.1.S1_x_at--134--511	1	NONE	GCACGTGGAGCTAGTCTGCTGCCTG	NONE
OsAffx.28150.1.S1_x_at--862--191	1	NONE	ACGTGGAGCTAGTCTGCTGCCTGCT	NONE
OsAffx.28150.1.S1_x_at--1014--751	1	NONE	GTGGAGCTAGTCTGCTGCCTGCTGA	NONE
OsAffx.28150.1.S1_x_at--67--855	1	NONE	TGGAGCTAGTCTGCTGCCTGCTGAG	NONE
OsAffx.28150.1.S1_x_at--389--1007	1	NONE	TAGTCTGCTGCCTGCTGAGGGAGCT	NONE
OsAffx.28150.1.S1_x_at--113--339	1	NONE	CAGCGCAGTCCCTCAAGCAGCTCAA	NONE

Target Sequence

AGGCGTCAAACGTGGCGCAGCTGGTCGGCGTCAACGCGCTCGGGCTGGTCTCCATGGTGGTGCAGGCGGCGCTGGCAGTG
CGCCTCCACCGGGACGCGTGCCGGCGGCTGGGGCAGCACGTGGAGCTAGTCTGCTGCCTGCTGAGGGAGCTGGAGCTCGC
CAAGCTGATGCGGCGAGGAGGCCACCAGCGCAGTCCCTCAAGCAGCTCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis