Browse Element(s) Details


Os.56282.1.S1_at

Description gb:AK109757.1
DB_XREF= gi:32994966
TID=Os.56282.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56282 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-G04, full insert sequence.
FL= gb:AK109757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4752011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47460NANA6+28741941..28746114hypothetical protein
LOC_Os06g47470OsAffx.28152.2.S1_at11/116+28749201..28756372Protein kinase domain containing protein, expressed
LOC_Os06g47480OsAffx.28151.1.S1_at11/116+28757923..28758357hypothetical protein
LOC_Os06g47490NANA6+28758951..28760043hypothetical protein
LOC_Os06g47500OsAffx.22699.1.S1_x_at2/116+28761362..28761872retrotransposon protein, putative, unclassified
LOC_Os06g47510NANA6+28762056..28765012retrotransposon protein, putative, unclassified
LOC_Os06g47520Os.56282.1.S1_at11/116+28767496..28769448expressed protein
LOC_Os06g47530OsAffx.28152.1.S1_s_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28152.1.S1_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28150.1.S1_x_at1/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47540OsAffx.28153.1.S1_at10/116+28776683..28778894hypothetical protein
LOC_Os06g47544Os.55355.1.S1_x_at9/116+28786766..28787333expressed protein
LOC_Os06g47550Os.18957.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47550OsAffx.28154.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56282.1.S1_at--190--871Chr06:28768583..28768607 (25 bp)
ATGGCTGCCGTATTCATGTCATTGC
LOC_Os06g47520
Os.56282.1.S1_at--1040--1631Chr06:28768635..28768659 (25 bp)
AGCGTTTGTGGCCTTCTACCAGAAG
LOC_Os06g47520
Os.56282.1.S1_at--697--8311Chr06:28768683..28768707 (25 bp)
GGCTCTTGAGTCTTGGCAGGTTCGA
LOC_Os06g47520
Os.56282.1.S1_at--1157--3531Chr06:28768723..28768747 (25 bp)
CATCGACGAGTCCAATAGCAGCTAC
LOC_Os06g47520
Os.56282.1.S1_at--717--291Chr06:28768737..28768761 (25 bp)
ATAGCAGCTACTCCAATGTGTTCAG
LOC_Os06g47520
Os.56282.1.S1_at--146--791Chr06:28768752..28768776 (25 bp)
ATGTGTTCAGGAGCATTCTTCAGAC
LOC_Os06g47520
Os.56282.1.S1_at--418--7911Chr06:28768780..28768804 (25 bp)
GGTTGCGCTGCTCAATATTCAGACA
LOC_Os06g47520
Os.56282.1.S1_at--231--5391Chr06:28768819..28768843 (25 bp)
GAAGCAATGTATTCCTCCCAAGGAG
LOC_Os06g47520
Os.56282.1.S1_at--489--6612Chr06:28768865..28768889 (25 bp)
GATTGGAGTTGCTTCTTACTGATGA
LOC_Os06g47520
Os.56282.1.S1_at--937--7531Chr06:28768909..28768933 (25 bp)
GTGGCTTCTTTTCACTGATGATTGA
LOC_Os06g47520
Os.56282.1.S1_at--631--8031Chr06:28769063..28769087 (25 bp)
GGAGTGTGCATTGTATCTGTGACCA
LOC_Os06g47520
Target Sequence 
ATGGCTGCCGTATTCATGTCATTGCCGCGGCATCCTCCTGCAAGAAGACGCCAGCGTTTGTGGCCTTCTACCAGAAGGCC
TCGCCGGAGACGGACGAGGTGGCTCTTGAGTCTTGGCAGGTTCGAGGCGTTGGAACAATGCATCGACGAGTCCAATAGCA
GCTACTCCAATGTGTTCAGGAGCATTCTTCAGACAAGGGTTGCGCTGCTCAATATTCAGACAAGGATTGGAACTTGGAAG
CAATGTATTCCTCCCAAGGAGATTTTGTTCCAACCCGGAGATGATTGGAGTTGCTTCTTACTGATGATTGGAGTACTAGA
TTATCAGTGGCTTCTTTTCACTGATGATTGAATATACTGCAATGAGATTTTTTTTCCTTCGTCACAAAGAGTACTCCTAA
TGAAGATTGGCACAATTGTGAATTGGGAGAACTATGTGGGGGGTCTGTAATGTGAATGTCCAAGCCAATATGTAATGTGC
GGAGTGTGCATTGTATCTGTGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis