Browse Element(s) Details


OsAffx.28153.1.S1_at

Description tigr:9634.m04631
TID=OsAffx.28153.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4754010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47470OsAffx.28152.2.S1_at11/116+28749201..28756372Protein kinase domain containing protein, expressed
LOC_Os06g47480OsAffx.28151.1.S1_at11/116+28757923..28758357hypothetical protein
LOC_Os06g47490NANA6+28758951..28760043hypothetical protein
LOC_Os06g47500OsAffx.22699.1.S1_x_at2/116+28761362..28761872retrotransposon protein, putative, unclassified
LOC_Os06g47510NANA6+28762056..28765012retrotransposon protein, putative, unclassified
LOC_Os06g47520Os.56282.1.S1_at11/116+28767496..28769448expressed protein
LOC_Os06g47530OsAffx.28152.1.S1_s_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28152.1.S1_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28150.1.S1_x_at1/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47540OsAffx.28153.1.S1_at10/116+28776683..28778894hypothetical protein
LOC_Os06g47544Os.55355.1.S1_x_at9/116+28786766..28787333expressed protein
LOC_Os06g47550Os.18957.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47550OsAffx.28154.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47560OsAffx.28155.1.S1_at11/116+28798019..28798515hypothetical protein
LOC_Os06g47570OsAffx.28156.1.S1_at11/116+28800753..28803728pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28153.1.S1_at--1062--9931Chr06:28778741..28778765 (25 bp)
TACGCACTCGTCACGGCATGCCTGT
LOC_Os06g47540
OsAffx.28153.1.S1_at--39--9691Chr06:28778731..28778755 (25 bp)
TCACGGCATGCCTGTGGACGCTTGT
LOC_Os06g47540
OsAffx.28153.1.S1_at--1048--3871Chr06:28778720..28778744 (25 bp)
CTGTGGACGCTTGTGGCATCTAACG
LOC_Os06g47540
OsAffx.28153.1.S1_at--655--7531Chr06:28778708..28778732 (25 bp)
GTGGCATCTAACGTGGTGTTCTGGT
LOC_Os06g47540
OsAffx.28153.1.S1_at--788--4451Chr06:28778650..28778674 (25 bp)
GCCTATGGCACAAGCAGGAGCTCGT
LOC_Os06g47540
OsAffx.28153.1.S1_at--758--9411Chr06:28778629..28778653 (25 bp)
TCGTGGCGCCACTGCGGTTAAACTC
LOC_Os06g47540
OsAffx.28153.1.S1_at--166--9831NONE
TAAACTCCGGCGCATGCTATTCTGC
NONE
OsAffx.28153.1.S1_at--269--9691Chr06:28776910..28776934 (25 bp)
TCACGGGAGTGCCACAGATCTATCT
LOC_Os06g47540
OsAffx.28153.1.S1_at--886--2131Chr06:28776897..28776921 (25 bp)
ACAGATCTATCTATACTGGCCGCCG
LOC_Os06g47540
OsAffx.28153.1.S1_at--748--1691Chr06:28776835..28776859 (25 bp)
ACCAAGAAGGGCTTGTCGATGTCGT
LOC_Os06g47540
OsAffx.28153.1.S1_at--215--1531Chr06:28776744..28776768 (25 bp)
AGCAGATCACAAACGTGGCAGCGGC
LOC_Os06g47540
Target Sequence 
TACGCACTCGTCACGGCATGCCTGTGGACGCTTGTGGCATCTAACGTGGTGTTCTGGTGGCGCAGTCCGCGCTCGGAGTC
GGAGGTGGGAGGCCTATGGCACAAGCAGGAGCTCGTGGCGCCACTGCGGTTAAACTCCGGCGCATGCTATTCTGCTCCCC
CTCCGCAGCCCATCTTGTTTCTCTCCTCACGGGAGTGCCACAGATCTATCTATACTGGCCGCCGCCTCGCGATTGTCTTC
TCCATCTCGCTCAAGAGCCTGACCAAGAAGGGCTTGTCGATGTCGTCGGTGCTAGTGGCGGCGGTGATGGCTGGGGTGTT
CTTCTCGGCGCTGGTGTCGACGGACACGGCGCAGCAGATCACAAACGTGGCAGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis