Browse Element(s) Details


OsAffx.28152.1.S1_s_at

Description tigr:9634.m04630
TID=OsAffx.28152.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4753011/11Protein kinase domain containing protein, expressed
LOC_Os06g477901/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47460NANA6+28741941..28746114hypothetical protein
LOC_Os06g47470OsAffx.28152.2.S1_at11/116+28749201..28756372Protein kinase domain containing protein, expressed
LOC_Os06g47480OsAffx.28151.1.S1_at11/116+28757923..28758357hypothetical protein
LOC_Os06g47490NANA6+28758951..28760043hypothetical protein
LOC_Os06g47500OsAffx.22699.1.S1_x_at2/116+28761362..28761872retrotransposon protein, putative, unclassified
LOC_Os06g47510NANA6+28762056..28765012retrotransposon protein, putative, unclassified
LOC_Os06g47520Os.56282.1.S1_at11/116+28767496..28769448expressed protein
LOC_Os06g47530OsAffx.28152.1.S1_s_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28152.1.S1_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28150.1.S1_x_at1/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47540OsAffx.28153.1.S1_at10/116+28776683..28778894hypothetical protein
LOC_Os06g47544Os.55355.1.S1_x_at9/116+28786766..28787333expressed protein
LOC_Os06g47550Os.18957.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47550OsAffx.28154.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47560OsAffx.28155.1.S1_at11/116+28798019..28798515hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28152.1.S1_s_at--86--7831Chr06:28769803..28769827 (25 bp)
GGTCATCGACATATATTGGTCACTC
LOC_Os06g47530
OsAffx.28152.1.S1_s_at--90--2652Chr06:28922756..28922778 (23 bp)
AACCAGAGTTCGCATCATTGTTGAA
LOC_Os06g47790
OsAffx.28152.1.S1_s_at--35--6071Chr06:28769728..28769752 (25 bp)
GAGTTCGCATCATTGTTGAACCAGA
LOC_Os06g47530
OsAffx.28152.1.S1_s_at--1000--6651Chr06:28769714..28769738 (25 bp)
GTTGAACCAGAGATTTGATTTGAGA
LOC_Os06g47530
OsAffx.28152.1.S1_s_at--875--1651Chr06:28769625..28769649 (25 bp)
AGCGCGGCGCTGCTGTCTTCCTCGA
LOC_Os06g47530
OsAffx.28152.1.S1_s_at--258--3871Chr06:28769613..28769637 (25 bp)
CTGTCTTCCTCGATGCCGACTCGAT
LOC_Os06g47530
OsAffx.28152.1.S1_s_at--947--6511Chr06:28769526..28769550 (25 bp)
GATATATTCAGATTCAGTCAAGCCA
LOC_Os06g47530
OsAffx.28152.1.S1_s_at--145--10531Chr06:28769520..28769544 (25 bp)
TTCAGATTCAGTCAAGCCATAACCT
LOC_Os06g47530
OsAffx.28152.1.S1_s_at--523--4431Chr06:28769505..28769529 (25 bp)
GCCATAACCTTGTTATTGTCCATTT
LOC_Os06g47530
OsAffx.28152.1.S1_s_at--468--10671Chr06:28769437..28769461 (25 bp)
TTCCTCTAGAGATACTTACTGTTTA
LOC_Os06g47530
OsAffx.28152.1.S1_s_at--339--10431Chr06:28769422..28769446 (25 bp)
TTACTGTTTAATTACTCCATTGGAG
LOC_Os06g47530
Target Sequence 
GGTCATCGACATATATTGGTCACTCAAGCAAGGCGATAGACATAACCATCACAAGTTCAGCTCCGGTTTCAACCAGAGTT
CGCATCATTGTTGAACCAGAGATTTGATTTGAGAAAAAAAAAAACAACCACCAGCTGTAGGAACCCGTGGCGCGGTGCAC
TTCTTCCTTGTGCTGCCCAGCGCGGCGCTGCTGTCTTCCTCGATGCCGACTCGATCGTCATCTCCCCCATGCTACCGCTG
CCCCGCCTCCTCCGATATAAGCGGATTCAGTCAAGTTGATATATTCAGATTCAGTCAAGCCATAACCTTGTTATTGTCCA
TTTTCTGATACAGTGCTAGTATTCTTCAGTCTTGGTGAACTTGTTCTTCCTCTAGAGATACTTACTGTTTAATTACTCCA
TTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28152.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis