Browse Element(s) Details


OsAffx.5138.1.S1_at

Description tigr:9634.m04637
TID=OsAffx.5138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4759011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47550Os.18957.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47550OsAffx.28154.1.S1_at11/116+28788033..28796547Cadmium/zinc-transporting ATPase HMA1, putative, expressed
LOC_Os06g47560OsAffx.28155.1.S1_at11/116+28798019..28798515hypothetical protein
LOC_Os06g47570OsAffx.28156.1.S1_at11/116+28800753..28803728pentatricopeptide, putative, expressed
LOC_Os06g47580Os.52582.1.S1_at11/116+28805783..28815146ImpB/MucB/SamB family protein, expressed
LOC_Os06g47590OsAffx.5138.1.S1_at11/116+28817164..28818182AP2 domain containing protein, expressed
LOC_Os06g47600Os.6291.1.S1_x_at11/116+28824832..28826005Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47600Os.6291.1.S1_at11/116+28824832..28826005Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47610NANA6+28829642..28830505transposon protein, putative, unclassified
LOC_Os06g47620Os.54966.1.S1_at11/116+28830650..28836130IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os06g47620OsAffx.19893.1.S1_at1/116+28830650..28836130IAA-amino acid hydrolase homolog 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009864biological_processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5138.1.S1_at--1033--471Chr06:28817806..28817830 (25 bp)
ATCTGAACATGCCACCTCCGGAGGA
LOC_Os06g47590
OsAffx.5138.1.S1_at--603--7551Chr06:28817850..28817874 (25 bp)
GTGGCCGATCAGATGGGTATCCGCT
LOC_Os06g47590
OsAffx.5138.1.S1_at--459--6251Chr06:28817861..28817885 (25 bp)
GATGGGTATCCGCTACGACACGCTG
LOC_Os06g47590
OsAffx.5138.1.S1_at--603--3711Chr06:28817894..28817918 (25 bp)
CTAGCTCGCTAGAACACCAATGATT
LOC_Os06g47590
OsAffx.5138.1.S1_at--155--5531Chr06:28817938..28817962 (25 bp)
GAAAAGATCGAGACAAGCTCTGCTG
LOC_Os06g47590
OsAffx.5138.1.S1_at--777--9451Chr06:28817987..28818011 (25 bp)
TCGGCTGATCCGATGGTGTTCTCAA
LOC_Os06g47590
OsAffx.5138.1.S1_at--770--6371Chr06:28817993..28818017 (25 bp)
GATCCGATGGTGTTCTCAAACTAGA
LOC_Os06g47590
OsAffx.5138.1.S1_at--993--5571Chr06:28818016..28818040 (25 bp)
GAAATGGATAATTCTTGCCTCCTTT
LOC_Os06g47590
OsAffx.5138.1.S1_at--690--10271Chr06:28818070..28818094 (25 bp)
TTTCTTACCACGTTGATGATTCGAT
LOC_Os06g47590
OsAffx.5138.1.S1_at--801--3151Chr06:28818103..28818127 (25 bp)
AATTCTGTGATGTAAGCTGCGAGCA
LOC_Os06g47590
OsAffx.5138.1.S1_at--952--4611Chr06:28818121..28818145 (25 bp)
GCGAGCAAGGAAATCTGAGCTTTTC
LOC_Os06g47590
Target Sequence 
ATCTGAACATGCCACCTCCGGAGGAGGAGCTAGACATGGCCGCCGTGGCCGATCAGATGGGTATCCGCTACGACACGCTG
CTCCGCCTCTAGCTCGCTAGAACACCAATGATTTGGAGTGGGGGGCGAGCTAGAAAAGATCGAGACAAGCTCTGCTGCTC
CGCTCTGCTCCGATCTCTTCTTCGGCTGATCCGATGGTGTTCTCAAACTAGAAATGGATAATTCTTGCCTCCTTTTTCTC
TCTTTTTCTCCTTTTTTTTCTTATTTTCTTACCACGTTGATGATTCGATATGTGAATAATTCTGTGATGTAAGCTGCGAG
CAAGGAAATCTGAGCTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis