Browse Element(s) Details


Os.52494.1.S1_at

Description gb:AK067517.1
DB_XREF= gi:32977535
TID=Os.52494.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111E23, full insert sequence.
FL= gb:AK067517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g476601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47600Os.6291.1.S1_x_at11/116+28824832..28826005Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47600Os.6291.1.S1_at11/116+28824832..28826005Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os06g47610NANA6+28829642..28830505transposon protein, putative, unclassified
LOC_Os06g47620Os.54966.1.S1_at11/116+28830650..28836130IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os06g47620OsAffx.19893.1.S1_at1/116+28830650..28836130IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os06g47630NANA6+28845114..28845938hypothetical protein
LOC_Os06g47640Os.53014.1.S1_at11/116+28846315..28847024EF hand family protein, expressed
LOC_Os06g47660Os.11189.2.S1_at11/116+28850713..28856262expressed protein
LOC_Os06g47660OsAffx.28159.1.S1_at10/116+28850713..28856262expressed protein
LOC_Os06g47660Os.52494.1.S1_at1/116+28850713..28856262expressed protein
LOC_Os06g47650Os.11189.1.S1_at11/116+28852113..28855938Leucine Rich Repeat family protein, expressed
LOC_Os06g47670OsAffx.28160.1.S1_x_at4/116+28856674..28857261hypothetical protein
LOC_Os06g47670OsAffx.28160.1.S1_at3/116+28856674..28857261hypothetical protein
LOC_Os06g47680OsAffx.10373.1.S1_x_at11/116+28858090..28859394F-box domain containing protein
LOC_Os06g47680OsAffx.10373.1.S1_at11/116+28858090..28859394F-box domain containing protein
LOC_Os06g47690OsAffx.15974.1.S1_at9/116+28862877..28864000hypothetical protein
LOC_Os06g47700Os.11785.1.S1_at11/116+28866479..28869892Leucine Rich Repeat family protein, expressed
LOC_Os06g47700Os.21111.1.S1_at2/116+28866479..28869892Leucine Rich Repeat family protein, expressed
LOC_Os06g47710OsAffx.15975.1.S1_at10/116+28871389..28872807expressed protein
LOC_Os06g47720NANA6+28873840..28877070Leucine Rich Repeat family protein
LOC_Os06g47730Os.49985.1.S1_at1/116+28880110..28886003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47730OsAffx.20303.1.S1_at1/116+28880110..28886003retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.52494.1.S1_at--565--6651Chr02:3038214..3038238 (25 bp)
GTTGATTGCAACCAGGCTCCTCATT
NONE
Os.52494.1.S1_at--991--7831Chr02:3038175..3038199 (25 bp)
GGATGGAAATTCTCCTGTAAACCTG
NONE
Os.52494.1.S1_at--387--231Chr02:3038141..3038165 (25 bp)
ATATTCAGAACCTGCAGTGGCCGGT
NONE
Os.52494.1.S1_at--205--6332Chr02:3000520..3000541 (22 bp)
GATGAATTCAGCTCTTGCAGGTCCC
NONE
Os.52494.1.S1_at--1136--2911Chr02:3038058..3038082 (25 bp)
AAGGACGATGATGCTGCCAGAGGAC
NONE
Os.52494.1.S1_at--551--6171Chr02:3038039..3038063 (25 bp)
GAGGACATCAGCTCCTCAGGAAGGC
NONE
Os.52494.1.S1_at--869--8132Chr06:28852741..28852864 (24 bp)
GGACAGGTTGAGGTGATGCCTTCCC
LOC_Os06g47660
Os.52494.1.S1_at--632--8891Chr02:3037707..3037731 (25 bp)
TGAGAAAGGCATCCCTAGCCTGCTT
NONE
Os.52494.1.S1_at--213--2151Chr02:3037678..3037702 (25 bp)
ACAGAGAATGTGGTGCCTCCTTCAT
NONE
Os.52494.1.S1_at--296--9512Chr02:3037649..3037673 (25 bp)
TCTCCCATCACAGCAGTGTTTGGAC
NONE
Os.52494.1.S1_at--99--2531Chr02:3037559..3037583 (25 bp)
AACTGAATGCATGTTTCGAACCCTG
NONE
Target Sequence
GTTGATTGCAACCAGGCTCCTCATTTTCTCCCATGTGGTGGATGGAAATTCTCCTGTAAACCTGTTGCTTGAGATATTCA
GAACCTGCAGTGGCCGGTCAGATACTGATGAATTCAGCTCTTGCAGGTCCCCGTCGAGGCGGTTGAAGCTGACATCAAGG
ACGATGATGCTGCCAGAGGACATCAGCTCCTCAGGAAGGCCACCGGAGAGCAAGTTGTAGGACAGGTTGAGGTGATGCCT
TCCCACGCGCAGCAGTCGATGCCATTCCGCCACGACATGGCGATGCCATTGTCATGCGATAGCCCAGCAAGGAACCGGAG
GAGAGAGCTCTTCTCCTGCTCAAGGCATGCAATGGTGGAGTTGGCCATGGAGAGCAGCAGCAACAATAAGGCAGCAGCAG
CGAGACCTGAGAAAGGCATCCCTAGCCTGCTTCTCCACAGAGAATGTGGTGCCTCCTTCATGATCTCTCCCATCACAGCA
GTGTTTGGACTTAGAATTTGGCAACTAATATTTGTTCGCGAAAAGTTACACTGTTCGGTGAGGATATATATACACAACTG
AATGCATGTTTCGAACCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis