Browse Element(s) Details


OsAffx.15974.1.S1_at

Description tigr:9634.m04647
TID=OsAffx.15974.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g476909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47630NANA6+28845114..28845938hypothetical protein
LOC_Os06g47640Os.53014.1.S1_at11/116+28846315..28847024EF hand family protein, expressed
LOC_Os06g47660Os.11189.2.S1_at11/116+28850713..28856262expressed protein
LOC_Os06g47660OsAffx.28159.1.S1_at10/116+28850713..28856262expressed protein
LOC_Os06g47660Os.52494.1.S1_at1/116+28850713..28856262expressed protein
LOC_Os06g47650Os.11189.1.S1_at11/116+28852113..28855938Leucine Rich Repeat family protein, expressed
LOC_Os06g47670OsAffx.28160.1.S1_x_at4/116+28856674..28857261hypothetical protein
LOC_Os06g47670OsAffx.28160.1.S1_at3/116+28856674..28857261hypothetical protein
LOC_Os06g47680OsAffx.10373.1.S1_x_at11/116+28858090..28859394F-box domain containing protein
LOC_Os06g47680OsAffx.10373.1.S1_at11/116+28858090..28859394F-box domain containing protein
LOC_Os06g47690OsAffx.15974.1.S1_at9/116+28862877..28864000hypothetical protein
LOC_Os06g47700Os.11785.1.S1_at11/116+28866479..28869892Leucine Rich Repeat family protein, expressed
LOC_Os06g47700Os.21111.1.S1_at2/116+28866479..28869892Leucine Rich Repeat family protein, expressed
LOC_Os06g47710OsAffx.15975.1.S1_at10/116+28871389..28872807expressed protein
LOC_Os06g47720NANA6+28873840..28877070Leucine Rich Repeat family protein
LOC_Os06g47730Os.49985.1.S1_at1/116+28880110..28886003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47730OsAffx.20303.1.S1_at1/116+28880110..28886003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47740NANA6+28887961..28891152Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15974.1.S1_at--298--3191Chr06:28863946..28863970 (25 bp)
CAATATTCTTGTGCGAGTTGTGCTT
LOC_Os06g47690
OsAffx.15974.1.S1_at--788--10211Chr06:28863943..28863967 (25 bp)
TATTCTTGTGCGAGTTGTGCTTGGG
LOC_Os06g47690
OsAffx.15974.1.S1_at--1064--3451NONE
CAGTGTGGAGATGAGGTTTTCACCT
NONE
OsAffx.15974.1.S1_at--981--6011NONE
GAGATGAGGTTTTCACCTGACGGTA
NONE
OsAffx.15974.1.S1_at--1031--6091Chr06:28863029..28863050 (22 bp)
GAGGTTTTCACCTGACGGTAGTACT
LOC_Os06g47690
OsAffx.15974.1.S1_at--1011--6791Chr06:28863026..28863050 (25 bp)
GTTTTCACCTGACGGTAGTACTTCT
LOC_Os06g47690
OsAffx.15974.1.S1_at--677--9671Chr06:28863022..28863046 (25 bp)
TCACCTGACGGTAGTACTTCTGCAA
LOC_Os06g47690
OsAffx.15974.1.S1_at--684--1751Chr06:28863020..28863044 (25 bp)
ACCTGACGGTAGTACTTCTGCAATG
LOC_Os06g47690
OsAffx.15974.1.S1_at--657--5751Chr06:28863017..28863040 (24 bp)
GACGGTAGTACTTCTGCAATGCAGA
LOC_Os06g47690
OsAffx.15974.1.S1_at--692--7011Chr06:28862923..28863033 (25 bp)
GTACTTCTGCAATGCAGACCTGCAG
LOC_Os06g47690
OsAffx.15974.1.S1_at--23--9471Chr06:28862918..28863028 (25 bp)
TCTGCAATGCAGACCTGCAGCTCAA
LOC_Os06g47690
Target Sequence
CAATATTCTTGTGCGAGTTGTGCTTGGGGCAGTGTGGAGATGAGGTTTTCACCTGACGGTAGTACTTCTGCAATGCAGAC
CTGCAGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis