Browse Element(s) Details

Os.11785.1.S1_at

Description

gb:AK110293.1
DB_XREF= gi:32995502
TID=Os.11785.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-163-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-163-G06, full insert sequence.
FL= gb:AK110293.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47700	11/11	Leucine Rich Repeat family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47630	NA	NA	6	+	28845114..28845938	hypothetical protein
LOC_Os06g47640	Os.53014.1.S1_at	11/11	6	+	28846315..28847024	EF hand family protein, expressed
LOC_Os06g47660	Os.11189.2.S1_at	11/11	6	+	28850713..28856262	expressed protein
LOC_Os06g47660	OsAffx.28159.1.S1_at	10/11	6	+	28850713..28856262	expressed protein
LOC_Os06g47660	Os.52494.1.S1_at	1/11	6	+	28850713..28856262	expressed protein
LOC_Os06g47650	Os.11189.1.S1_at	11/11	6	+	28852113..28855938	Leucine Rich Repeat family protein, expressed
LOC_Os06g47670	OsAffx.28160.1.S1_x_at	4/11	6	+	28856674..28857261	hypothetical protein
LOC_Os06g47670	OsAffx.28160.1.S1_at	3/11	6	+	28856674..28857261	hypothetical protein
LOC_Os06g47680	OsAffx.10373.1.S1_x_at	11/11	6	+	28858090..28859394	F-box domain containing protein
LOC_Os06g47680	OsAffx.10373.1.S1_at	11/11	6	+	28858090..28859394	F-box domain containing protein
LOC_Os06g47690	OsAffx.15974.1.S1_at	9/11	6	+	28862877..28864000	hypothetical protein
LOC_Os06g47700	Os.11785.1.S1_at	11/11	6	+	28866479..28869892	Leucine Rich Repeat family protein, expressed
LOC_Os06g47700	Os.21111.1.S1_at	2/11	6	+	28866479..28869892	Leucine Rich Repeat family protein, expressed
LOC_Os06g47710	OsAffx.15975.1.S1_at	10/11	6	+	28871389..28872807	expressed protein
LOC_Os06g47720	NA	NA	6	+	28873840..28877070	Leucine Rich Repeat family protein
LOC_Os06g47730	Os.49985.1.S1_at	1/11	6	+	28880110..28886003	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47730	OsAffx.20303.1.S1_at	1/11	6	+	28880110..28886003	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47740	NA	NA	6	+	28887961..28891152	Leucine Rich Repeat family protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0007165	biological_process	signal transduction
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11785.1.S1_at--601--479	1	Chr06:28866899..28866923 (25 bp)	GCTCACGGGAAGACGCCCCGTCGAG	LOC_Os06g47700
Os.11785.1.S1_at--181--339	1	Chr06:28866704..28866728 (25 bp)	CAGCCGACCGGCGATACAAGAAGTG	LOC_Os06g47700
Os.11785.1.S1_at--128--287	1	Chr06:28866684..28866708 (25 bp)	AAGTGGTTAGCTGGCTCGACAACGT	LOC_Os06g47700
Os.11785.1.S1_at--964--561	1	Chr06:28866667..28866691 (25 bp)	GACAACGTCGACACCATCGGCAGAT	LOC_Os06g47700
Os.11785.1.S1_at--9--565	1	Chr06:28866658..28866682 (25 bp)	GACACCATCGGCAGATCATGACATT	LOC_Os06g47700
Os.11785.1.S1_at--1011--643	1	Chr06:28866645..28866669 (25 bp)	GATCATGACATTTGAGCCTCATTTG	LOC_Os06g47700
Os.11785.1.S1_at--213--1077	1	Chr06:28866634..28866658 (25 bp)	TTGAGCCTCATTTGCTAACATCGAT	LOC_Os06g47700
Os.11785.1.S1_at--836--1027	1	Chr06:28866624..28866648 (25 bp)	TTTGCTAACATCGATACTGTGTGCG	LOC_Os06g47700
Os.11785.1.S1_at--134--649	1	Chr06:28866612..28866636 (25 bp)	GATACTGTGTGCGAACTGAGCGTTC	LOC_Os06g47700
Os.11785.1.S1_at--414--547	1	Chr06:28866600..28866624 (25 bp)	GAACTGAGCGTTCTGTGATGCGAAA	LOC_Os06g47700
Os.11785.1.S1_at--3--947	1	Chr06:28866589..28866613 (25 bp)	TCTGTGATGCGAAATTGGGAGTAAT	LOC_Os06g47700

Target Sequence

GCTCACGGGAAGACGCCCCGTCGAGGCGGCCTCGCCGCCGCNACGGGCAGCAGCGGGAGCTCGTCCGGTGGGTGCTGCAG
ATGCGGTTGCAGGGGAGACAGGCCGAGGTGCTCGACACGCGGCTGANCGGAGGCAACGAGGCGCAGATGCTGTACGTGCT
CGACCTCGCATGCCTCTGCGTCGACTCGACGCCGTTCAGCCGACCGGCGATACAAGAAGTGGTTAGCTGGCTCGACAACG
TCGACACCATCGGCAGATCATGACATTTGAGCCTCATTTGCTAACATCGATACTGTGTGCGAACTGAGCGTTCTGTGATG
CGAAATTGGGAGTAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis