Browse Element(s) Details


OsAffx.22124.2.S1_x_at

Description gb:NM_188356.1
DB_XREF= gi:34903795
GEN=OSJNBa0016I09.11
TID=OsAffx.22124.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0016I09.11 (OSJNBa0016I09.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1097011/11Integral membrane protein DUF6 containing protein
LOC_Os01g109801/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10910Os.43764.1.A1_at5/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.7.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.2.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.3.S1_x_at1/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10920OsAffx.11852.2.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_x_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10930Os.32657.1.S1_at11/111+5825355..5827630Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10940NANA1+5830415..5830909S-adenosylmethionine synthetase 1, putative
LOC_Os01g10950Os.14564.1.S1_at11/111+5834398..5836700Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10960Os.34020.2.S1_at4/111+5838538..5840376Peptide-N4-asparagine amidase A, putative
LOC_Os01g10970OsAffx.22124.3.S1_s_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.2.S1_x_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.1.S1_x_at1/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10980OsAffx.22124.1.S1_at11/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10980OsAffx.22124.1.S1_x_at11/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10980OsAffx.22124.2.S1_x_at1/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.30989.1.S1_at11/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.7779.1.S1_x_at1/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g11000OsAffx.1284.1.S1_at11/111+5862191..5866284transposon protein, putative, unclassified
LOC_Os01g11000Os.54966.1.S1_at2/111+5862191..5866284transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22124.2.S1_x_at--1021--3251Chr01:5845198..5845222 (25 bp)
CAACGTGACGTGGTCGCTCTGGATC
LOC_Os01g10970
OsAffx.22124.2.S1_x_at--203--8611Chr01:5845208..5845232 (25 bp)
TGGTCGCTCTGGATCGTGCTCATGT
LOC_Os01g10970
OsAffx.22124.2.S1_x_at--286--8571Chr01:5845217..5845241 (25 bp)
TGGATCGTGCTCATGTCGCCGCTGC
LOC_Os01g10970
OsAffx.22124.2.S1_x_at--530--2591Chr01:5845244..5845268 (25 bp)
AACGAGTACCCCTGCAAGATGCTGG
LOC_Os01g10970
OsAffx.22124.2.S1_x_at--1118--2791Chr01:5845259..5845283 (25 bp)
AAGATGCTGGCCACGGCGCTGCAGT
LOC_Os01g10970
OsAffx.22124.2.S1_x_at--127--9331Chr01:5845413..5845437 (25 bp)
TCTCCTACTACCTCCAGGCGTGGTG
LOC_Os01g10970
OsAffx.22124.2.S1_x_at--535--3811Chr01:5845424..5845448 (25 bp)
CTCCAGGCGTGGTGCATCCAGAAGA
LOC_Os01g10970
OsAffx.22124.2.S1_x_at--1062--9652Chr01:5854454..5854478 (25 bp)
TCAGCTTCGTCTTCACCATCTTCTG
LOC_Os01g10980
OsAffx.22124.2.S1_x_at--995--7791Chr01:5845558..5845582 (25 bp)
GGTCCTGATGGTGGCCGGCCTCTAC
LOC_Os01g10970
OsAffx.22124.2.S1_x_at--117--2931Chr01:5845604..5845628 (25 bp)
AAGGAGCACGACACGCTCACGGTCG
LOC_Os01g10970
OsAffx.22124.2.S1_x_at--943--5051Chr01:5845680..5845704 (25 bp)
GCAGCAGCAGTGACAATGAGAGCAA
LOC_Os01g10970
Target Sequence 
CAACGTGACGTGGTCGCTCTGGATCGTGCTCATGTCGCCGCTGCTCAACGAGTACCCCTGCAAGATGCTGGCCACGGCGC
TGCAGTCCCTGCTCAGCGCGGCGCAGTCGCTGGTGCTCGCGGCGGCGGCGGCGGCGCGGAACCCGGCGGCGCGGAGGCTG
CGGCTCGACGCCGGCCTCCTCGCCGTCGCCTACTCCGCCGTCGCCGTCACCGGGGTCTCCTACTACCTCCAGGCGTGGTG
CATCCAGAAGAAGGGGCCCGTGTTCCTGGCCATGTCCAGCCCGCTCAGCTTCGTCTTCACCATCTTCTGCTCCTCCTTCT
TCCTCGGCGAGGTCGTCCACCTCGGCAGCGTCGTCGGCGGGGTCCTGATGGTGGCCGGCCTCTACAGCGTGCTCTGGGGC
AAGAGCAAGGAGCACGACACGCTCACGGTCGCCGCCGGACAGCAGGAAGAAGACGCTGCTGCACCACCCGCTGCAGAGAG
CAGCAGCAGCAGTGACAATGAGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22124.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis