Browse Element(s) Details


OsAffx.22124.1.S1_x_at

Description gb:NM_188358.1
DB_XREF= gi:34903799
GEN=OSJNBa0016I09.13
TID=OsAffx.22124.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0016I09.13 (OSJNBa0016I09.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1098011/11Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g109701/11Integral membrane protein DUF6 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10940NANA1+5830415..5830909S-adenosylmethionine synthetase 1, putative
LOC_Os01g10950Os.14564.1.S1_at11/111+5834398..5836700Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10960Os.34020.2.S1_at4/111+5838538..5840376Peptide-N4-asparagine amidase A, putative
LOC_Os01g10970OsAffx.22124.3.S1_s_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.2.S1_x_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.1.S1_x_at1/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10980OsAffx.22124.1.S1_at11/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10980OsAffx.22124.1.S1_x_at11/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10980OsAffx.22124.2.S1_x_at1/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.30989.1.S1_at11/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.7779.1.S1_x_at1/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g11000OsAffx.1284.1.S1_at11/111+5862191..5866284transposon protein, putative, unclassified
LOC_Os01g11000Os.54966.1.S1_at2/111+5862191..5866284transposon protein, putative, unclassified
LOC_Os01g11010Os.32162.1.S1_at11/111+5872596..5874651Peptide-N4-asparagine amidase A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22124.1.S1_x_at--80--7371Chr01:5854141..5854165 (25 bp)
GTGAAAGGCACGTTGCTGATGCTGC
LOC_Os01g10980
OsAffx.22124.1.S1_x_at--143--10711Chr01:5854153..5854177 (25 bp)
TTGCTGATGCTGCTGTCGAACGCGA
LOC_Os01g10980
OsAffx.22124.1.S1_x_at--1132--5431Chr01:5854170..5854194 (25 bp)
GAACGCGACGTGGTCGCTCTGGACC
LOC_Os01g10980
OsAffx.22124.1.S1_x_at--111--9351Chr01:5854183..5854207 (25 bp)
TCGCTCTGGACCGTGCTGATGGCGT
LOC_Os01g10980
OsAffx.22124.1.S1_x_at--471--3471Chr01:5854215..5854239 (25 bp)
CAGGGAGTACCCCAGCAAGCTGCTG
LOC_Os01g10980
OsAffx.22124.1.S1_x_at--1005--1911Chr01:5854378..5854402 (25 bp)
ACGGGCGCCTCCCTGTACATGCAGG
LOC_Os01g10980
OsAffx.22124.1.S1_x_at--1072--4251Chr01:5854389..5854413 (25 bp)
CCTGTACATGCAGGCGTGGTGCATC
LOC_Os01g10980
OsAffx.22124.1.S1_x_at--1063--9652Chr01:5854454..5854478 (25 bp)
TCAGCTTCGTCTTCACCATCTTCTG
LOC_Os01g10980
OsAffx.22124.1.S1_x_at--807--4211Chr01:5854619..5854643 (25 bp)
CCGCCTCCGTGCAACAGCAAGAAAA
LOC_Os01g10980
OsAffx.22124.1.S1_x_at--1057--2731Chr01:5854642..5854666 (25 bp)
AAGAAGGTCGCTGCAGTACCAGCTC
LOC_Os01g10980
OsAffx.22124.1.S1_x_at--26--3451Chr01:5854655..5854679 (25 bp)
CAGTACCAGCTCCTGCAGACAGCAG
LOC_Os01g10980
Target Sequence 
GTGAAAGGCACGTTGCTGATGCTGCTGTCGAACGCGACGTGGTCGCTCTGGACCGTGCTGATGGCGTCGCTGCTCAGGGA
GTACCCCAGCAAGCTGCTGGCCACGGCGGCGCAGTGCGCGCTCAGCGCGGCGCAGTCGCTCGCGCTGGCGGCGGCGGCGG
CGGGGCGCGACCCGGCCGCGTGGAGGCTGCGGCCCGACGCCGGCCTCCTCGCCGTCGCCTACTCCGCCGTCGCCGTCACG
GGCGCCTCCCTGTACATGCAGGCGTGGTGCATCGAGAAGAAGGGACCCGTGTTCCTGGCCATGTCCAACCCGCTCAGCTT
CGTCTTCACCATCTTCTGCGCGCTCTTCGTCCTCGGCGAGGTCGTCCACCTCGGCAGCGTCGTCGGCGGGGTCCTCATGG
TGGTTGGCCTCTACAGCGTGCTGTGGGGCAAGAGCAAGGAGCACGACACGCTCACGCTCGCCACCGCCATGCCCACGCCC
GCCTCCGTGCAACAGCAAGAAAAGAAGGTCGCTGCAGTACCAGCTCCTGCAGACAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22124.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis