Browse Element(s) Details


Os.32162.1.S1_at

Description gb:AK105750.1
DB_XREF= gi:32990959
TID=Os.32162.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0016I09.19 (OSJNBa0016I09.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B10, full insert sequence.
FL= gb:AK105750.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1101011/11Peptide-N4-asparagine amidase A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10980OsAffx.22124.1.S1_at11/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10980OsAffx.22124.1.S1_x_at11/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10980OsAffx.22124.2.S1_x_at1/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.30989.1.S1_at11/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.7779.1.S1_x_at1/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g11000OsAffx.1284.1.S1_at11/111+5862191..5866284transposon protein, putative, unclassified
LOC_Os01g11000Os.54966.1.S1_at2/111+5862191..5866284transposon protein, putative, unclassified
LOC_Os01g11010Os.32162.1.S1_at11/111+5872596..5874651Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g11020NANA1+5880808..5881374hypothetical protein
LOC_Os01g11030OsAffx.11005.2.S1_at11/111+5885172..5886574NA
LOC_Os01g11030OsAffx.11005.2.S1_x_at11/111+5885172..5886574NA
LOC_Os01g11040Os.28458.1.S1_at11/111+5887407..5895026WH2 motif family protein, expressed
LOC_Os01g11054Os.27513.1.A1_a_at11/111+5896363..5906375Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os01g11054OsAffx.10695.1.S1_at1/111+5896363..5906375Phosphoenolpyruvate carboxylase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32162.1.S1_at--633--431Chr01:5873129..5873153 (25 bp)
ATCTACCAGGGCCAGGTGAACCAGA
LOC_Os01g11010
Os.32162.1.S1_at--307--7711Chr01:5873115..5873139 (25 bp)
GGTGAACCAGACGTCGAACGACTCG
LOC_Os01g11010
Os.32162.1.S1_at--1005--9351Chr01:5873102..5873126 (25 bp)
TCGAACGACTCGTTCACCGAGGAGA
LOC_Os01g11010
Os.32162.1.S1_at--425--10611Chr01:5873024..5873048 (25 bp)
TTCTGGTCCCGGTCGCTGAGCAACG
LOC_Os01g11010
Os.32162.1.S1_at--376--8911Chr01:5873008..5873032 (25 bp)
TGAGCAACGCGCAGGACTCCGCCGT
LOC_Os01g11010
Os.32162.1.S1_at--1126--5891Chr01:5872740..5872764 (25 bp)
GAGCTCGTGAGAAATGGCTGCACTT
LOC_Os01g11010
Os.32162.1.S1_at--135--3331Chr01:5872720..5872744 (25 bp)
CACTTTTGAGTGTTTGCGCGATCTA
LOC_Os01g11010
Os.32162.1.S1_at--410--4571Chr01:5872705..5872729 (25 bp)
GCGCGATCTAATTAAGCTCCTTTCA
LOC_Os01g11010
Os.32162.1.S1_at--818--2691Chr01:5872692..5872716 (25 bp)
AAGCTCCTTTCATTTGTATGATTAC
LOC_Os01g11010
Os.32162.1.S1_at--663--1311Chr01:5872649..5872673 (25 bp)
AGATGTGCCCGTCAAGTGTACACTT
LOC_Os01g11010
Os.32162.1.S1_at--952--6531Chr01:5872617..5872641 (25 bp)
GATTTATCGTTTTATCTGTTGCAAT
LOC_Os01g11010
Target Sequence 
ATCTACCAGGGCCAGGTGAACCAGACGTCGAACGACTCGTTCACCGAGGAGACGAGCGTGCAGCTGCGGTTCGAGGAGGA
GAGGGTCGCCGCCGGCCGGCCGGGGTTCTGGTCCCGGTCGCTGAGCAACGCGCAGGACTCCGCCGTGGACGTCCGCGTGC
AGGAAGGGGACGCCGTCGGGACGTCGTGGCGCGCGGCGCAGACGTACAGGTACGAGGCGACGGACGGGTGCTACTACCGG
GACGTGGCCAGCCAGGGCTACGGCGTCGTCTCCGACCACGCCGACGAGGTCTGCGCGAAGGGATCGCCTGCCGCCGGCCG
TGCCATTGCCGGCGGCGCCGCGACGGAGTTAGGCGGCGACGCCGCGGCGGCTGCGGGAGTGGCACGGCTGAGCTCGTGAG
AAATGGCTGCACTTTTGAGTGTTTGCGCGATCTAATTAAGCTCCTTTCATTTGTATGATTACTTTATACACTACACATAG
AGATGTGCCCGTCAAGTGTACACTTTGGTGAAGATTTATCGTTTTATCTGTTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis