Browse Element(s) Details


OsAffx.11005.2.S1_x_at

Description tigr:9629.m01058
TID=OsAffx.11005.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1103011/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10990Os.30989.1.S1_at11/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.7779.1.S1_x_at1/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g11000OsAffx.1284.1.S1_at11/111+5862191..5866284transposon protein, putative, unclassified
LOC_Os01g11000Os.54966.1.S1_at2/111+5862191..5866284transposon protein, putative, unclassified
LOC_Os01g11010Os.32162.1.S1_at11/111+5872596..5874651Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g11020NANA1+5880808..5881374hypothetical protein
LOC_Os01g11030OsAffx.11005.2.S1_at11/111+5885172..5886574NA
LOC_Os01g11030OsAffx.11005.2.S1_x_at11/111+5885172..5886574NA
LOC_Os01g11040Os.28458.1.S1_at11/111+5887407..5895026WH2 motif family protein, expressed
LOC_Os01g11054Os.27513.1.A1_a_at11/111+5896363..5906375Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os01g11054OsAffx.10695.1.S1_at1/111+5896363..5906375Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os01g11070Os.17532.1.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_s_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11005.2.S1_x_at--885--8433Chr05:23152993..23153016 (24 bp)
GGCCAGAAGGCGACAACACCCGGAG
NONE
OsAffx.11005.2.S1_x_at--1091--4552Chr02:2950738..2950760 (23 bp)
GCGCTGCTGGAAAGCAAACCAAAGT
NONE
OsAffx.11005.2.S1_x_at--311--2791Chr01:5885221..5885245 (25 bp)
AAGAGGAAGGCATTGCGCTCATGAT
LOC_Os01g11030
OsAffx.11005.2.S1_x_at--717--6191Chr01:5885219..5885243 (25 bp)
GAGGAAGGCATTGCGCTCATGATCA
LOC_Os01g11030
OsAffx.11005.2.S1_x_at--336--5291Chr01:5885216..5885240 (25 bp)
GAAGGCATTGCGCTCATGATCAAAT
LOC_Os01g11030
OsAffx.11005.2.S1_x_at--812--2931Chr01:5885215..5885239 (25 bp)
AAGGCATTGCGCTCATGATCAAATT
LOC_Os01g11030
OsAffx.11005.2.S1_x_at--271--8291Chr01:5885213..5885237 (25 bp)
GGCATTGCGCTCATGATCAAATTCA
LOC_Os01g11030
OsAffx.11005.2.S1_x_at--166--4951Chr01:5885212..5885236 (25 bp)
GCATTGCGCTCATGATCAAATTCAC
LOC_Os01g11030
OsAffx.11005.2.S1_x_at--797--71Chr01:5885210..5885234 (25 bp)
ATTGCGCTCATGATCAAATTCACAT
LOC_Os01g11030
OsAffx.11005.2.S1_x_at--313--9151Chr01:5885208..5885232 (25 bp)
TGCGCTCATGATCAAATTCACATGT
LOC_Os01g11030
OsAffx.11005.2.S1_x_at--1038--4811Chr01:5885205..5885229 (25 bp)
GCTCATGATCAAATTCACATGTAAA
LOC_Os01g11030
Target Sequence 
GGCCAGAAGGCGACAACACCCGGAGCCAGACCTGCCGAGCGAACACGCAGTCGAGGAGAATGTGGTTCGCCGTCTCAAGA
TCCTGAGCATAAAAGGGGCAAGTCGAGTGACTATCGATGCCACGCTTTTGGAGGAGATCAGCCGTCCAGCAGCGCTGCTG
GAAAGCAAACCAAAGTGGATGGGGAAAAAGAGGAAGGCATTGCGCTCATGATCAAATTCACATGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11005.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis