Browse Element(s) Details


Os.28458.1.S1_at

Description gb:AK104676.1
DB_XREF= gi:32989885
TID=Os.28458.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.28458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0016I09.22 (OSJNBa0016I09.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B05, full insert sequence.
FL= gb:AK120865.1 gb:AK067713.1 gb:AK104676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1104011/11WH2 motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11000OsAffx.1284.1.S1_at11/111+5862191..5866284transposon protein, putative, unclassified
LOC_Os01g11000Os.54966.1.S1_at2/111+5862191..5866284transposon protein, putative, unclassified
LOC_Os01g11010Os.32162.1.S1_at11/111+5872596..5874651Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g11020NANA1+5880808..5881374hypothetical protein
LOC_Os01g11030OsAffx.11005.2.S1_at11/111+5885172..5886574NA
LOC_Os01g11030OsAffx.11005.2.S1_x_at11/111+5885172..5886574NA
LOC_Os01g11040Os.28458.1.S1_at11/111+5887407..5895026WH2 motif family protein, expressed
LOC_Os01g11054Os.27513.1.A1_a_at11/111+5896363..5906375Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os01g11054OsAffx.10695.1.S1_at1/111+5896363..5906375Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os01g11070Os.17532.1.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_s_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11080OsAffx.9938.1.S1_at11/111+5914965..5916014Transposable element protein, putative, Retrotrans_gag
LOC_Os01g11110Os.11930.1.S1_at11/111+5918561..593091114-3-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0016337biological_processcell-cell adhesion
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0045010biological_processactin nucleation
GO:0051127biological_processpositive regulation of actin nucleation
GO:0031209cellular_componentSCAR complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28458.1.S1_at--697--2871Chr01:5894124..5894148 (25 bp)
AAGGGAGGAGTTGCTTCAACAAATC
LOC_Os01g11040
Os.28458.1.S1_at--506--2551Chr01:5894495..5894519 (25 bp)
AACTCCAGCGTTGTAGCAATCTTGG
LOC_Os01g11040
Os.28458.1.S1_at--983--8231Chr01:5894524..5894633 (25 bp)
GGCAAATGCAATCCGCCAGGCTGTG
LOC_Os01g11040
Os.28458.1.S1_at--216--271Chr01:5894673..5894697 (25 bp)
ATATGAATACTCAACTGGAACGCGT
LOC_Os01g11040
Os.28458.1.S1_at--779--3891Chr01:5894687..5894711 (25 bp)
CTGGAACGCGTATGAAACTCTTTTT
LOC_Os01g11040
Os.28458.1.S1_at--44--8691Chr01:5894748..5894772 (25 bp)
TGTGAATAACATCCTTTTCTTCATT
LOC_Os01g11040
Os.28458.1.S1_at--862--9571Chr01:5894768..5894792 (25 bp)
TCATTGTAATTAGATTTTCCAGGTC
LOC_Os01g11040
Os.28458.1.S1_at--567--10271Chr01:5894783..5894807 (25 bp)
TTTCCAGGTCTGTTTTGTACCTCTT
LOC_Os01g11040
Os.28458.1.S1_at--607--10811Chr01:5894797..5894821 (25 bp)
TTGTACCTCTTTTTAGTTCACATTA
LOC_Os01g11040
Os.28458.1.S1_at--823--10431Chr01:5894819..5894843 (25 bp)
TTAGTGTATTCTCTCATAGGCCCAT
LOC_Os01g11040
Os.28458.1.S1_at--61--4551Chr01:5894838..5894862 (25 bp)
GCCCATGCGGTTGTGGAAATGGTTA
LOC_Os01g11040
Target Sequence 
AAGGGAGGAGTTGCTTCAACAAATCAGGAGCAAGACATTCAATTTAAGACGAACAAATGCATNTAAGACAAACACCTCAT
CACCAACCACTGCCAACTCCAGCGTTGTAGCAATCTTGGAAAAGGCAAATGCAATCCGCCAGGCTGTGGCCAGTGATGAG
GGAGGTGATGATGATAGTTGGAGTGATATATGAATACTCAACTGGAACGCGTATGAAACTCTTTTTCTGTATATTCAGCT
AGTACAAGATGAAGTGAAAAAATGTGAATAACATCCTTTTCTTCATTGTAATTAGATTTTCCAGGTCTGTTTTGTACCTC
TTTTTAGTTCACATTAGTGTATTCTCTCATAGGCCCATGCGGTTGTGGAAATGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis