Browse Element(s) Details


OsAffx.1284.1.S1_at

Description gb:NM_188362.1
DB_XREF= gi:34903807
GEN=OSJNBa0016I09.17
TID=OsAffx.1284.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0016I09.17 (OSJNBa0016I09.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1100011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10960Os.34020.2.S1_at4/111+5838538..5840376Peptide-N4-asparagine amidase A, putative
LOC_Os01g10970OsAffx.22124.3.S1_s_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.2.S1_x_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.1.S1_x_at1/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10980OsAffx.22124.1.S1_at11/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10980OsAffx.22124.1.S1_x_at11/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10980OsAffx.22124.2.S1_x_at1/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.30989.1.S1_at11/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.7779.1.S1_x_at1/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g11000OsAffx.1284.1.S1_at11/111+5862191..5866284transposon protein, putative, unclassified
LOC_Os01g11000Os.54966.1.S1_at2/111+5862191..5866284transposon protein, putative, unclassified
LOC_Os01g11010Os.32162.1.S1_at11/111+5872596..5874651Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g11020NANA1+5880808..5881374hypothetical protein
LOC_Os01g11030OsAffx.11005.2.S1_at11/111+5885172..5886574NA
LOC_Os01g11030OsAffx.11005.2.S1_x_at11/111+5885172..5886574NA
LOC_Os01g11040Os.28458.1.S1_at11/111+5887407..5895026WH2 motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1284.1.S1_at--382--1271Chr01:5865419..5865443 (25 bp)
AGATATCCGGCATCCCTGAACTAAT
LOC_Os01g11000
OsAffx.1284.1.S1_at--15--4693Chr06:15974366..15974385 (20 bp)
TCAAAACCGGTCACAATAAGTCTTT
NONE
OsAffx.1284.1.S1_at--380--10472Chr01:31047527..31047547 (21 bp)
TTGACCCCGATTTTATCCTACATGG
NONE
OsAffx.1284.1.S1_at--1121--152Chr12:22838474..22838578 (24 bp)
ATTTTATCCTACATGGCCGGTCGGC
NONE
OsAffx.1284.1.S1_at--738--1833Chr04:105508..105533 (25 bp)
ACGCGATAGCAACACTCGACTGGTT
NONE
OsAffx.1284.1.S1_at--448--2473Chr04:105498..105523 (25 bp)
AACACTCGACTGGTTTTGCTCTCGG
NONE
OsAffx.1284.1.S1_at--418--2773Chr04:101949..101973 (25 bp)
AAGACGACGTGCTTCAGGTGCGCCC
NONE
OsAffx.1284.1.S1_at--716--7293Chr04:101932..101956 (25 bp)
GTGCGCCCTGTTGTTGGATGCGTCC
NONE
OsAffx.1284.1.S1_at--572--611Chr01:5864897..5864921 (25 bp)
ATGCGTCCGCCGGAGTGATGATCGT
LOC_Os01g11000
OsAffx.1284.1.S1_at--762--1111Chr01:5864884..5864908 (25 bp)
AGTGATGATCGTTGTCTCGTGCCAC
LOC_Os01g11000
OsAffx.1284.1.S1_at--51--691Chr01:5864826..5864850 (25 bp)
ATGACTGCGAGCTACTGTGTGGGTT
LOC_Os01g11000
Target Sequence 
AGATATCCGGCATCCCTGAACTAATCAAAACCGGTCACAATAAGTCTTTTGGTGGTTTTGACCCCGATTTTATCCTACAT
GGCCGGTCGGCCGGGAGAGGTGGAGGGCGGCGCCACGACGGCAGTCGGCGGCGGCGGCGGCAGCGGCAGCACGGCGAAGC
TCCGCGGCGGCCGTACGAGGGCCGCGACGCTGAGAAGGACGCGATAGCAACACTCGACTGGTTTTGCTCTCGGGCCTCGC
GAAGGCGAAGAAGTCTCCTCGACCTCGACGCTCGTCGTGAAGACGACGTGCTTCAGGTGCGCCCTGTTGTTGGATGCGTC
CGCCGGAGTGATGATCGTTGTCTCGTGCCACCGCCGCGTCACACGCAGGAGCTCGCCGCGCGGCATGACTGCGAGCTACT
GTGTGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis