Browse Element(s) Details


Os.14564.1.S1_at

Description gb:AK109337.2
DB_XREF= gi:42821654
TID=Os.14564.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.14564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0016I09.9 (OSJNBa0016I09.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D09, full insert sequence.
FL= gb:AK109337.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1095011/11Peptide-N4-asparagine amidase A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10900Os.33454.1.S1_at11/111+5811629..5816009Leucine Rich Repeat family protein, expressed
LOC_Os01g10910Os.43764.1.A1_at5/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.7.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.2.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.3.S1_x_at1/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10920OsAffx.11852.2.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_x_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10930Os.32657.1.S1_at11/111+5825355..5827630Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10940NANA1+5830415..5830909S-adenosylmethionine synthetase 1, putative
LOC_Os01g10950Os.14564.1.S1_at11/111+5834398..5836700Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10960Os.34020.2.S1_at4/111+5838538..5840376Peptide-N4-asparagine amidase A, putative
LOC_Os01g10970OsAffx.22124.3.S1_s_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.2.S1_x_at11/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10970OsAffx.22124.1.S1_x_at1/111+5841504..5845747Integral membrane protein DUF6 containing protein
LOC_Os01g10980OsAffx.22124.1.S1_at11/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10980OsAffx.22124.1.S1_x_at11/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10980OsAffx.22124.2.S1_x_at1/111+5853269..5854722Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.30989.1.S1_at11/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g10990Os.7779.1.S1_x_at1/111+5858695..5860379Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14564.1.S1_at--211--1631Chr01:5834946..5834970 (25 bp)
AGCGGCACGTCCTCGCAGCGGCTGA
LOC_Os01g10950
Os.14564.1.S1_at--503--4051Chr01:5834909..5834933 (25 bp)
CGATCGGCTTCGACGAGACGCGCGC
LOC_Os01g10950
Os.14564.1.S1_at--590--5931Chr01:5834854..5834878 (25 bp)
GAGCACGCTCCACAACGAACAGACG
LOC_Os01g10950
Os.14564.1.S1_at--92--3951Chr01:5834740..5834764 (25 bp)
CGGCTGCTACTCGAGGAACGTGAGC
LOC_Os01g10950
Os.14564.1.S1_at--756--8291Chr01:5834709..5834733 (25 bp)
GGCTACGACGTGCTATTCGACCACA
LOC_Os01g10950
Os.14564.1.S1_at--399--7291Chr01:5834700..5834724 (25 bp)
GTGCTATTCGACCACAATGAGGAGT
LOC_Os01g10950
Os.14564.1.S1_at--552--1711Chr01:5834690..5834714 (25 bp)
ACCACAATGAGGAGTCGTGCGCCGG
LOC_Os01g10950
Os.14564.1.S1_at--464--4351Chr01:5834534..5834558 (25 bp)
CCAGTGTGTGCTGGCGGGCCCTACT
LOC_Os01g10950
Os.14564.1.S1_at--228--7571Chr01:5834519..5834543 (25 bp)
GGGCCCTACTTAAGTCTTTGCAATT
LOC_Os01g10950
Os.14564.1.S1_at--516--7151Chr01:5834506..5834530 (25 bp)
GTCTTTGCAATTATTGATGGATCAC
LOC_Os01g10950
Os.14564.1.S1_at--127--6251Chr01:5834491..5834515 (25 bp)
GATGGATCACTCCAGTGTCCTTAAC
LOC_Os01g10950
Target Sequence 
AGCGGCACGTCCTCGCAGCGGCTGATGCGGCGCGTGGCGATCGGCTTCGACGAGACGCGCGCGGCGGGCGCGGGCGGGAG
TTCGTCGGCAGCGAGCACGCTCCACAACGAACAGACGGCGGCGGCGGAGGTGGTGCTCCGGGACGACCAGGTGGTCGGCG
CGTCGTGGCGGATGCACCAGGTGTACGAGTACGGCGGCAGCGACGGCGGCTGCTACTCGAGGAACGTGAGCAGCGTCGGC
TACGACGTGCTATTCGACCACAATGAGGAGTCGTGCGCCGGGACGCGCCGACGTTGACGCCTGTCGGCGCCGGCGCGGCG
TGGCGTGGCGTGGCGCGGCGCGCGTAGGGATAGAGCGAGTGGATAGGGGGCCCGGAAGAGATCGACAGGGTGTAAATGGA
ACGGAAGGTGGGCCAGTGTGTGCTGGCGGGCCCTACTTAAGTCTTTGCAATTATTGATGGATCACTCCAGTGTCCTTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis