Browse Element(s) Details


Os.28976.1.S1_at

Description gb:AK110817.1
DB_XREF= gi:32996026
TID=Os.28976.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-G05, full insert sequence.
FL= gb:AK110817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1080011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10720NANA1+5733101..5737553retrotransposon protein, putative, unclassified
LOC_Os01g10729OsAffx.9946.1.S1_at4/111+5741029..5741364NA
LOC_Os01g10740OsAffx.22126.1.S1_at5/111+5745671..5746072hypothetical protein
LOC_Os01g10750Os.45990.2.S1_x_at8/111+5746869..5747237hypothetical protein
LOC_Os01g10760OsAffx.11001.1.S1_at11/111+5747505..5747837hypothetical protein
LOC_Os01g10770NANA1+5754293..5755409hypothetical protein
LOC_Os01g10780OsAffx.23193.1.S1_at11/111+5756620..5757036hypothetical protein
LOC_Os01g10790Os.1402.1.S1_at10/111+5757288..5761404WD-repeat protein 53, putative, expressed
LOC_Os01g10800Os.28976.1.S1_at11/111+5761454..5764704pentatricopeptide, putative, expressed
LOC_Os01g10810OsAffx.11002.1.S1_at11/111+5765013..5766263Rho termination factor, N-terminal domain containing protein, expressed
LOC_Os01g10820Os.1404.1.S1_at10/111+5766864..576907460S ribosomal protein L11, putative, expressed
LOC_Os01g10830Os.22640.1.A1_at11/111+5770102..5770992enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g10840Os.18766.1.S1_s_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.18766.1.S1_x_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.48021.1.S1_x_at2/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.52172.2.S1_x_at1/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10850Os.1406.1.S1_at11/111+5786135..5787911Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28976.1.S1_at--64--1071Chr01:5761942..5761966 (25 bp)
AGGGTACTATGTTCTTCTTGCCAAC
LOC_Os01g10800
Os.28976.1.S1_at--248--6191Chr01:5761814..5761838 (25 bp)
GAGGAAAGGCCCATATCTTCTTCGC
LOC_Os01g10800
Os.28976.1.S1_at--81--3111Chr01:5761694..5761718 (25 bp)
AATATGCTCTGATGGGCGCTGACGA
LOC_Os01g10800
Os.28976.1.S1_at--826--8391Chr01:5761680..5761704 (25 bp)
GGCGCTGACGATGCTGTTCATGATG
LOC_Os01g10800
Os.28976.1.S1_at--1009--6211Chr01:5761656..5761680 (25 bp)
GAGGCGCTCTGTGGGCATAGTTCAA
LOC_Os01g10800
Os.28976.1.S1_at--414--291Chr01:5761640..5761664 (25 bp)
ATAGTTCAAAGCTCGCCGTGGCATT
LOC_Os01g10800
Os.28976.1.S1_at--543--8291Chr01:5761621..5761645 (25 bp)
GGCATTCGGTGTTCTGAATCTGTCA
LOC_Os01g10800
Os.28976.1.S1_at--800--5251Chr01:5761606..5761630 (25 bp)
GAATCTGTCACAAGGGCGGCCAATC
LOC_Os01g10800
Os.28976.1.S1_at--695--4671Chr01:5761591..5761615 (25 bp)
GCGGCCAATCCGTGTGACCAAGAAT
LOC_Os01g10800
Os.28976.1.S1_at--214--3231Chr01:5761565..5761589 (25 bp)
CAAGAGTTTGCAGCCATTGCCATGA
LOC_Os01g10800
Os.28976.1.S1_at--1161--51Chr01:5761550..5761574 (25 bp)
ATTGCCATGAGGCTGCCAAGTTCAT
LOC_Os01g10800
Target Sequence 
AGGGTACTATGTTCTTCTTGCCAACATCTATGCTGAAGCTGAGAGATGGGAGGCTGTCAGGAAGCTCAAGAACAAGGTTG
GTGGCCGTGGGCTCCGTGAGAACACTGGCTGCAGCTGGATTGAAGTGAGAGGAAAGGCCCATATCTTCTTCGCGGAAAAC
CGAAATCATCCACAAGGAATGAGGATTGCAGAGTTCCTGGATGATGTTGCCAGGAGGATGCAGGAAGAAGGCCATGATCC
TAAGAAAAAATATGCTCTGATGGGCGCTGACGATGCTGTTCATGATGAGGCGCTCTGTGGGCATAGTTCAAAGCTCGCCG
TGGCATTCGGTGTTCTGAATCTGTCACAAGGGCGGCCAATCCGTGTGACCAAGAATTCAAGAGTTTGCAGCCATTGCCAT
GAGGCTGCCAAGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis