Browse Element(s) Details


OsAffx.10999.1.S1_x_at

Description gb:NM_188329.1
DB_XREF= gi:34903741
TID=OsAffx.10999.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1070011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10680Os.33166.1.S1_at11/111+5696454..5704560expressed protein
LOC_Os01g10690Os.24974.1.S1_a_at11/111+5715703..5720986expressed protein
LOC_Os01g10700OsAffx.10999.1.S1_x_at11/111+5724128..5726558D-mannose binding lectin family protein
LOC_Os01g10710OsAffx.23191.1.S1_at11/111+5728585..5731122D-mannose binding lectin family protein
LOC_Os01g10720NANA1+5733101..5737553retrotransposon protein, putative, unclassified
LOC_Os01g10729OsAffx.9946.1.S1_at4/111+5741029..5741364NA
LOC_Os01g10740OsAffx.22126.1.S1_at5/111+5745671..5746072hypothetical protein
LOC_Os01g10750Os.45990.2.S1_x_at8/111+5746869..5747237hypothetical protein
LOC_Os01g10760OsAffx.11001.1.S1_at11/111+5747505..5747837hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10999.1.S1_x_at--176--3111Chr01:5725980..5726004 (25 bp)
AATATCATCACCGACATTGCTAGGG
LOC_Os01g10700
OsAffx.10999.1.S1_x_at--1033--10071Chr01:5726000..5726024 (25 bp)
TAGGGCCCTTGCTTATCTTCATGAG
LOC_Os01g10700
OsAffx.10999.1.S1_x_at--411--6551Chr01:5726106..5726130 (25 bp)
GATTTTGGATTGTCTAGGCTGATAC
LOC_Os01g10700
OsAffx.10999.1.S1_x_at--235--291Chr01:5726131..5726155 (25 bp)
ATAGGGACCAGAGTCACGTGACAAC
LOC_Os01g10700
OsAffx.10999.1.S1_x_at--235--6511Chr01:5726176..5726200 (25 bp)
GATATTTGTCCCCTGAATGGTTAAC
LOC_Os01g10700
OsAffx.10999.1.S1_x_at--1007--811Chr01:5726192..5726216 (25 bp)
ATGGTTAACATCTCATATCACCGAG
LOC_Os01g10700
OsAffx.10999.1.S1_x_at--768--2631Chr01:5726274..5726298 (25 bp)
AACCTTGACCATTCCAATCTTGGAG
LOC_Os01g10700
OsAffx.10999.1.S1_x_at--888--5291Chr01:5726330..5726354 (25 bp)
GAAGGCACAGAACAGTCACCTGGAA
LOC_Os01g10700
OsAffx.10999.1.S1_x_at--291--5191Chr01:5726374..5726398 (25 bp)
GCAATGACATGTCCTTACACCAACA
LOC_Os01g10700
OsAffx.10999.1.S1_x_at--303--7411Chr01:5726443..5726467 (25 bp)
GTGATTGCAACAGAAGGCCTTCCAT
LOC_Os01g10700
OsAffx.10999.1.S1_x_at--828--5291Chr01:5726455..5726479 (25 bp)
GAAGGCCTTCCATGTCATTGGTGAT
LOC_Os01g10700
Target Sequence 
AATATCATCACCGACATTGCTAGGGCCCTTGCTTATCTTCATGAGGAGTGCACACATAAGATTGCTCATCTGGATATCAA
ACCACAAAATATCCTCTTAGATGATAACTTCAATGCCAAAGTTTGTGATTTTGGATTGTCTAGGCTGATACATAGGGACC
AGAGTCACGTGACAACCAGAATGAGAGGAACACCTGGATATTTGTCCCCTGAATGGTTAACATCTCATATCACCGAGAAG
GTTGATGTCTATAGTTATGGAGTTGTGATGATTGAAATCATCAATGGAAGGCCAAACCTTGACCATTCCAATCTTGGAGG
GGGTATTCAGCTCCTTAAATTACTGCAAGAGAAGGCACAGAACAGTCACCTGGAAGATATGATTGACAGGAAGTGCAATG
ACATGTCCTTACACCAACAGGATGTGATAAAGATAATGAAGCTTGCAATGTGGTGCTTGCAGAGTGATTGCAACAGAAGG
CCTTCCATGTCATTGGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10999.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis