Browse Element(s) Details


Os.45980.1.S1_at

Description gb:NM_188316.1
DB_XREF= gi:34903715
GEN=P0489A05.24
TID=Os.45980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45980 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative major intrinsic protein (P0489A05.24), mRNA.
PROD=putative major intrinsic protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g106008/11Aquaporin NIP1.2, putative, expressed
LOC_Os01g105301/11Major intrinsic protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10580Os.15198.1.S1_at11/111+5636571..5638292B-box zinc finger family protein, expressed
LOC_Os01g10590OsAffx.23189.1.S1_s_at11/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10590OsAffx.23189.2.S1_at10/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10590OsAffx.23189.1.S1_at6/111+5649395..5652154TWIN SISTER of FT protein, putative, expressed
LOC_Os01g10600Os.45980.1.S1_s_at10/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.45980.1.S1_at8/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.23187.1.S1_at5/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600OsAffx.9949.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10600Os.1288.1.S1_at4/111+5660125..5665705Aquaporin NIP1.2, putative, expressed
LOC_Os01g10610Os.1302.1.S1_at11/111+5665791..5668272BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os01g10630Os.54635.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10630Os.5956.1.S1_at11/111+5672471..5676353H+-ATPase FO-part b-subunit, putative, expressed
LOC_Os01g10640Os.1305.1.S1_at11/111+5682396..5683203expressed protein
LOC_Os01g10650OsAffx.1979.1.S1_x_at11/111+5686691..5687149hypothetical protein
LOC_Os01g10660OsAffx.23190.2.S1_at11/111+5690466..5690792hypothetical protein
LOC_Os01g10660OsAffx.23190.1.S1_at1/111+5690466..5690792hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45980.1.S1_at--288--3791Chr01:5662406..5662430 (25 bp)
CTCGTCGTCATGGTGCTAGTCTACA
LOC_Os01g10600
Os.45980.1.S1_at--1024--7191Chr01:5662403..5662427 (25 bp)
GTCGTCATGGTGCTAGTCTACACTG
LOC_Os01g10600
Os.45980.1.S1_at--108--7131Chr01:5662400..5662424 (25 bp)
GTCATGGTGCTAGTCTACACTGTCA
LOC_Os01g10600
Os.45980.1.S1_at--975--811Chr01:5662397..5662421 (25 bp)
ATGGTGCTAGTCTACACTGTCAGCC
LOC_Os01g10600
Os.45980.1.S1_at--180--7331Chr01:5662394..5662418 (25 bp)
GTGCTAGTCTACACTGTCAGCCACA
LOC_Os01g10600
Os.45980.1.S1_at--685--10051Chr01:5662390..5662414 (25 bp)
TAGTCTACACTGTCAGCCACATCTC
LOC_Os01g10600
Os.45980.1.S1_at--45--9871Chr01:5662385..5662409 (25 bp)
TACACTGTCAGCCACATCTCCGGTG
LOC_Os01g10600
Os.45980.1.S1_at--799--4911NONE
GCTTCCGGTGGAAGCAGGTGCCATC
NONE
Os.45980.1.S1_at--749--4251NONE
CCGGTGGAAGCAGGTGCCATCGTAC
NONE
Os.45980.1.S1_at--232--7531Chr01:5588990..5589450 (25 bp)
GTGGAAGCAGGTGCCATCGTACGTG
LOC_Os01g10530
Os.45980.1.S1_at--507--1791Chr01:5660169..5660193 (25 bp)
ACCGACAAGCCGCTGCGTGACATCG
LOC_Os01g10600
Target Sequence 
CTCGTCGTCATGGTGCTAGTCTACACTGTCAGCCACATCTCCGGTGCCCACTTCAACCCCGCCGTCACCGTCGCCTTCGC
CACGTGCGGACGCTTCCGGTGGAAGCAGGTGCCATCGTACGTGGTGGCCCAGGTGCTGGGATCCACCATGGCAAGCCTGA
CGCTGCGCGTGGTGTTCGGCGGCGGCGGCGGCGGCGCGCGCGGGGAGCACTTGTTCTTCGGGACGACGCCGGCGGGGTCG
ATGGCGCAGGCGGCGGCGCTGGAGTTCGTCATCTCCTTCTTCCTCATGTTCGTCGTCTCCGGCGTCGCCACGGACAACAG
AGCAATCGGTGAATTGGCTGGGCTCGCTGTCGGTGCGACGGTCGCGGTGAACGTGCTCTTCGCAGGGCCGGTGACGGGGG
CGTCGATGAACCCGGCTCGGAGCCTTGGTCCGGCGATGGTGGCGGGGAGGTACGGCGGCGTGTGGGTGTACGTGGCGGCG
CCGGTGAGCGGGACGGTGTGCGGCGCGTGGGCGTACAACCTGCTCCGCTTCACCGACAAGCCGCTGCGTGACATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis