Browse Element(s) Details


Os.23504.1.A1_at

Description gb:CA759818
DB_XREF= gi:25803857
DB_XREF=BR060008A20G11.ab1
CLONE=BR060008A20G11.ab1
TID=Os.23504.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23504 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489A05.7 (P0489A05.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g105206/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10504Os.320.2.S1_a_at11/111+5557004..5565646Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os01g10520OsAffx.22137.1.S1_at11/111+5575556..5582069expressed protein
LOC_Os01g10520OsAffx.22137.1.S1_x_at10/111+5575556..5582069expressed protein
LOC_Os01g10520Os.23504.1.A1_at6/111+5575556..5582069expressed protein
LOC_Os01g10530OsAffx.23187.1.S1_at11/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10530Os.45980.1.S1_s_at10/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10530Os.1288.1.S1_at4/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10530Os.45980.1.S1_at1/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10540OsAffx.22137.1.S1_at11/111+5590591..5595948expressed protein
LOC_Os01g10540OsAffx.22137.1.S1_x_at11/111+5590591..5595948expressed protein
LOC_Os01g10540Os.1288.1.S1_at3/111+5590591..5595948expressed protein
LOC_Os01g10550OsAffx.23188.1.S1_x_at3/111+5597523..5597976hypothetical protein
LOC_Os01g10550OsAffx.23188.1.S1_at2/111+5597523..5597976hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23504.1.A1_at--490--1991Chr01:5576816..5576840 (25 bp)
ACTCCTGTGTTTCTTTCGGGAGTAG
LOC_Os01g10520
Os.23504.1.A1_at--235--1471NONE
AGAAGTGATAGATCGTGCATGCACG
NONE
Os.23504.1.A1_at--417--1291Chr01:5575864..5575888 (25 bp)
AGATCGATCGAGATGACTTTGTGGA
LOC_Os01g10520
Os.23504.1.A1_at--947--8991NONE
TGCAAGACTTTTAGAGCCGTCCCTA
NONE
Os.23504.1.A1_at--309--5831Chr01:5575820..5575844 (25 bp)
GAGCCGTCCCTAGCTTAGAAATCTT
LOC_Os01g10520
Os.23504.1.A1_at--241--5051NONE
GCAGCATTTAATTTCGTTCTTTACT
NONE
Os.23504.1.A1_at--346--2291Chr01:5575760..5575779 (20 bp)
AAATGCATGCTCGAATGTAAGGGAT
LOC_Os01g10520
Os.23504.1.A1_at--794--4871NONE
GCTATAGTGGGTAAAGGCTTGTCGA
NONE
Os.23504.1.A1_at--334--2431Chr01:5575641..5575665 (25 bp)
AAAAGTTGGTCGTGTCTGTACAATG
LOC_Os01g10520
Os.23504.1.A1_at--1019--7711NONE
GGGTGTGGCATCCAGATCATGCCTA
NONE
Os.23504.1.A1_at--374--2911Chr01:5575587..5575611 (25 bp)
AAGGTTATGTGCCTTTTCGCACCTT
LOC_Os01g10520
Target Sequence 
ACTCCTGTGTTTCTTTCGGGAGTAGGAGAGNAAATGCTTNAGCAACTCGCAACATGGGAGCCGAGCTGTACAAGTTATAG
TCCAAATAATGCTTAAACTTGGGCATGTTTTTCCTGAGCTGTTGCGGAGGAGTAAACTGTAGGTTGAAGGAGTTGAGAAG
ATAGTGGAGAAGTGATAGATCGTGCATGCACGGATAACAAGAAGCAACAGATCGATCGAGATGACTTTGTGGATCAGAAT
GCAAGACTTTTAGAGCCGTCCCTAGCTTAGAAATCTTGCAGCATTTAATTTCGTTCTTTACTTAAGAGAGATGACAAAAA
TGCATGCTCGAATGTAAGGGATATGTGTTTGTGTGTTTGTTTTTGTTAAATTTTATACTTGGAGAATTGAGGTAGTGATT
GATCTAGCTATAGTGGGTAAAGGCTTGTCGAAAAAGTTGGTCGTGTCTGTACAATGGGGTGTGGCATCCAGATCATGCCT
AAAGGAAGGTTATGTGCCTTTTCGCACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23504.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis