Browse Element(s) Details


OsAffx.23188.1.S1_x_at

Description gb:NM_188306.1
DB_XREF= gi:34903695
GEN=P0489A05.12
TID=OsAffx.23188.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0489A05.12 (P0489A05.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g105503/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10520OsAffx.22137.1.S1_at11/111+5575556..5582069expressed protein
LOC_Os01g10520OsAffx.22137.1.S1_x_at10/111+5575556..5582069expressed protein
LOC_Os01g10520Os.23504.1.A1_at6/111+5575556..5582069expressed protein
LOC_Os01g10530OsAffx.23187.1.S1_at11/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10530Os.45980.1.S1_s_at10/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10530Os.1288.1.S1_at4/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10530Os.45980.1.S1_at1/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10540OsAffx.22137.1.S1_at11/111+5590591..5595948expressed protein
LOC_Os01g10540OsAffx.22137.1.S1_x_at11/111+5590591..5595948expressed protein
LOC_Os01g10540Os.1288.1.S1_at3/111+5590591..5595948expressed protein
LOC_Os01g10550OsAffx.23188.1.S1_x_at3/111+5597523..5597976hypothetical protein
LOC_Os01g10550OsAffx.23188.1.S1_at2/111+5597523..5597976hypothetical protein
LOC_Os01g10560NANA1+5613162..5613695transposon protein, putative, unclassified
LOC_Os01g10570Os.43567.1.S1_x_at4/111+5615324..5615990retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g10570Os.38172.1.S1_x_at2/111+5615324..5615990retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23188.1.S1_x_at--591--1051Chr01:5596607..5596704 (25 bp)
AGGTGGGCACACACGGCAGCCAAGT
NONE
OsAffx.23188.1.S1_x_at--1128--2831Chr01:5597327..5597351 (25 bp)
AAGTCAACACCACATCCACAAATCG
NONE
OsAffx.23188.1.S1_x_at--208--3052Chr01:5597347..5597371 (25 bp)
AATCGCTCGATGCACCGCCGCTGTG
NONE
OsAffx.23188.1.S1_x_at--490--8691Chr01:5597368..5597392 (25 bp)
TGTGCTTGCCGATGCTTTCCTCGCT
NONE
OsAffx.23188.1.S1_x_at--413--4231Chr01:5597429..5597453 (25 bp)
CCGTGCCGTGCTTGCCGATGCTTTC
NONE
OsAffx.23188.1.S1_x_at--1055--7531Chr01:5597463..5597487 (25 bp)
GTGGCTCACCGGCAAGACGCGCAAT
NONE
OsAffx.23188.1.S1_x_at--210--5811Chr01:5597478..5597502 (25 bp)
GACGCGCAATCTAGGGCAAGCACAT
NONE
OsAffx.23188.1.S1_x_at--48--9551Chr01:5597487..5597511 (25 bp)
TCTAGGGCAAGCACATGTGATGGCG
NONE
OsAffx.23188.1.S1_x_at--970--4451Chr01:5597633..5597657 (25 bp)
GCCTCTTCTGCGTCGGCAGGTTGCT
LOC_Os01g10550
OsAffx.23188.1.S1_x_at--381--3471Chr01:5597649..5597673 (25 bp)
CAGGTTGCTGTTGCCGTCGGTGACG
LOC_Os01g10550
OsAffx.23188.1.S1_x_at--891--1871Chr01:5597671..5597695 (25 bp)
ACGATGGCGCCATGGAGTTCTGCTT
LOC_Os01g10550
Target Sequence 
AGGTGGGCACACACGGCAGCCAAGTCAACACCACATCCACAAATCGCTCGATGCACCGCCGCTGTGCTTGCCGATGCTTT
CCTCGCTGCCGTGGCTCGCCGGCGAGACGTTCCCGTCCATCGCCCGTGCCGTGCTTGCCGATGCTTTCCTCGCTGCCGTG
GCTCACCGGCAAGACGCGCAATCTAGGGCAAGCACATGTGATGGCGAGGTGAGGGCGATGGCGTGTGCACGGGGGGGCGT
GGAAGGAGGCGGAGCTCCTGTACGAGCGGCGCGACCAGCGGTCACTGCCGCACCGACGGCCCAGCCACCGCAGCTGCCTT
CTGCTCCGCCTCTTCTGCGTCGGCAGGTTGCTGTTGCCGTCGGTGACGATGGCGCCATGGAGTTCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23188.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis