Browse Element(s) Details


Os.46513.1.S1_at

Description gb:AK069561.1
DB_XREF= gi:32979585
TID=Os.46513.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cell cycle regulatory protein (OSJNBa0029C15.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022F23, full insert sequence.
FL= gb:AK069561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3458011/11FHA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34520Os.12368.1.S1_at11/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34520OsAffx.28592.1.S1_at2/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34529NANA10+18086905..18087850hypothetical protein
LOC_Os10g34540Os.46560.1.S1_at11/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34540Os.46560.2.S1_x_at10/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34550OsAffx.8005.1.S1_at11/1110+18096523..18097989hypothetical protein
LOC_Os10g34560OsAffx.30672.1.S1_at11/1110+18099878..18100504hypothetical protein
LOC_Os10g34570OsAffx.8003.1.S1_at7/1110+18103350..18103878hypothetical protein
LOC_Os10g34580Os.46513.1.S1_at11/1110+18104783..18108669FHA domain containing protein, expressed
LOC_Os10g34590Os.46054.1.S1_at11/1110+18109186..18112785Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34602Os.46831.1.S1_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.3.S1_x_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_x_at9/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_at4/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34614Os.10059.1.S1_at11/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.10059.2.S1_at10/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.46831.2.S1_x_at1/1110+18121479..18124769expressed protein
LOC_Os10g34630NANA10+18127150..18130107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34640OsAffx.20387.1.S1_x_at1/1110+18130359..18132647transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46513.1.S1_at--682--4791Chr10:18107831..18107855 (25 bp)
GCTCGTGCCGAATCCATAGAAACTG
LOC_Os10g34580
Os.46513.1.S1_at--1037--7711Chr10:18107855..18107879 (25 bp)
GGTGGCATTAACTTCAAACGCTTTA
LOC_Os10g34580
Os.46513.1.S1_at--976--8091Chr10:18108006..18108030 (25 bp)
GGACCTAATCCCGTATTCACGAGAA
LOC_Os10g34580
Os.46513.1.S1_at--1051--5451Chr10:18108132..18108156 (25 bp)
GAACGGTAACTGACTTCATGCGAGA
LOC_Os10g34580
Os.46513.1.S1_at--809--8511Chr10:18108177..18108201 (25 bp)
TGGAAGCCATTGCAGAGGACCTCTT
LOC_Os10g34580
Os.46513.1.S1_at--287--5051Chr10:18108313..18108337 (25 bp)
GCAGCTGCTGGTAGTTCGATTCACA
LOC_Os10g34580
Os.46513.1.S1_at--260--9971Chr10:18108345..18108369 (25 bp)
TACCGGCCGCAGATGAAACCCAGGA
LOC_Os10g34580
Os.46513.1.S1_at--179--9531Chr10:18108391..18108415 (25 bp)
TCTACCTGACCCTTTGTTGGAAGAC
LOC_Os10g34580
Os.46513.1.S1_at--187--3851Chr10:18108437..18108461 (25 bp)
CTGCATTTTTGGCTATCTTCTGGAT
LOC_Os10g34580
Os.46513.1.S1_at--37--2391Chr10:18108484..18108508 (25 bp)
AAACGTTTTCTGGAGTCGATGACTG
LOC_Os10g34580
Os.46513.1.S1_at--1013--7031Chr10:18108616..18108640 (25 bp)
GTACAAGCCCAGAATCCGAGCAATT
LOC_Os10g34580
Target Sequence 
GCTCGTGCCGAATCCATAGAAACTGGTGGCATTAACTTCAAACGCTTTAGAAAGAGAGGAGCAGTGTCTGGAAACAGCTT
CAAGGACCTAATCCCGTATTCACGAGAACCATACAGAGAATCTGATTACGAGCGTGGAACGGTAACTGACTTCATGCGAG
AGGAGAAGAAGCGGAGGCAAATGGAAGCCATTGCAGAGGACCTCTTCAACAATGCAAAGCCAAAGAAGAAGGCAGCTGCT
GGTAGTTCGATTCACACCATGCTTACCGGCCGCAGATGAAACCCAGGAAAATCACCACAGAACATGTCCTCTACCTGACC
CTTTGTTGGAAGACCAGAGAAATCAATCGCATATGCTGCATTTTTGGCTATCTTCTGGATGATTGCCTTCTATCATCTAT
GTAAACGTTTTCTGGAGTCGATGACTGTAAGTTGGTTGACATGGAAGGGGGGTGTGAGATGTGAATCGTGTATCATAGGC
AGTTCTTTTCCTGCCCAAATTTTGGAGTTACTACCACATGTTGGATGAGCTTGCGTACAAGCCCAGAATCCGAGCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis