Browse Element(s) Details


Os.46560.1.S1_at

Description gb:AK063937.1
DB_XREF= gi:32973955
TID=Os.46560.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative tetratricopeptide repeat protein (OSJNBa0029C15.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D11, full insert sequence.
FL= gb:AK063937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3454011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34490OsAffx.25492.1.S1_at11/1110+18072612..18073671hypothetical protein
LOC_Os10g34490OsAffx.19217.1.S1_x_at3/1110+18072612..18073671hypothetical protein
LOC_Os10g34500Os.46659.1.S1_at11/1110+18074647..18078245expressed protein
LOC_Os10g34500Os.46659.1.S1_x_at10/1110+18074647..18078245expressed protein
LOC_Os10g34520Os.12368.1.S1_at11/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34520OsAffx.28592.1.S1_at2/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34529NANA10+18086905..18087850hypothetical protein
LOC_Os10g34540Os.46560.1.S1_at11/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34540Os.46560.2.S1_x_at10/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34550OsAffx.8005.1.S1_at11/1110+18096523..18097989hypothetical protein
LOC_Os10g34560OsAffx.30672.1.S1_at11/1110+18099878..18100504hypothetical protein
LOC_Os10g34570OsAffx.8003.1.S1_at7/1110+18103350..18103878hypothetical protein
LOC_Os10g34580Os.46513.1.S1_at11/1110+18104783..18108669FHA domain containing protein, expressed
LOC_Os10g34590Os.46054.1.S1_at11/1110+18109186..18112785Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34602Os.46831.1.S1_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.3.S1_x_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_x_at9/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_at4/1110+18116465..18119997csAtPR5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46560.1.S1_at--435--8151Chr10:18095521..18095545 (25 bp)
GGACAAGTACACATGCAGTCACTGT
LOC_Os10g34540
Os.46560.1.S1_at--301--5031Chr10:18095535..18095559 (25 bp)
GCAGTCACTGTAAATCCTGGAATGC
LOC_Os10g34540
Os.46560.1.S1_at--222--8211Chr10:18095553..18095577 (25 bp)
GGAATGCTAATGTCATTTGGTTCAA
LOC_Os10g34540
Os.46560.1.S1_at--287--2531Chr10:18095579..18095603 (25 bp)
AACTTTGGCCCTTTTGTATCAATAG
LOC_Os10g34540
Os.46560.1.S1_at--1134--3091Chr10:18095599..18095623 (25 bp)
AATAGGTTTGTTACCATCGCCCGCA
LOC_Os10g34540
Os.46560.1.S1_at--751--1731Chr10:18095611..18095635 (25 bp)
ACCATCGCCCGCAGTTAAATCTGAA
LOC_Os10g34540
Os.46560.1.S1_at--436--6251Chr10:18095636..18095660 (25 bp)
GATGGTGCATGGACGTTTGCAGTTA
LOC_Os10g34540
Os.46560.1.S1_at--799--8111Chr10:18095646..18095670 (25 bp)
GGACGTTTGCAGTTATGTTCTGAGA
LOC_Os10g34540
Os.46560.1.S1_at--1032--6871Chr10:18095695..18095719 (25 bp)
GTATTATAGGCGTTTGCCACGCTGT
LOC_Os10g34540
Os.46560.1.S1_at--202--4371Chr10:18095711..18095735 (25 bp)
CCACGCTGTGATTCTCTTCATTTTA
LOC_Os10g34540
Os.46560.1.S1_at--879--6571Chr10:18095720..18095744 (25 bp)
GATTCTCTTCATTTTATCATAGCAA
LOC_Os10g34540
Target Sequence 
GGACAAGTACACATGCAGTCACTGTAAATCCTGGAATGCTAATGTCATTTGGTTCAAAAACTTTGGCCCTTTTGTATCAA
TAGGTTTGTTACCATCGCCCGCAGTTAAATCTGAAGATGGTGCATGGACGTTTGCAGTTATGTTCTGAGAGAGGTGGTTT
AGATGAGTGAACTTGTATTATAGGCGTTTGCCACGCTGTGATTCTCTTCATTTTATCATAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis