Browse Element(s) Details


Os.12368.1.S1_at

Description gb:AK063786.1
DB_XREF= gi:32973804
TID=Os.12368.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative thioredoxin-like U5 small ribonucleoprotein particle protein (OSJNBa0029C15.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-D12, full insert sequence.
FL= gb:AK122085.1 gb:AK063786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3452011/11Thioredoxin-like protein 4A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34470Os.54752.1.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.2.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.4.S1_s_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34480Os.10785.3.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34480OsAffx.30670.1.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34490OsAffx.25492.1.S1_at11/1110+18072612..18073671hypothetical protein
LOC_Os10g34490OsAffx.19217.1.S1_x_at3/1110+18072612..18073671hypothetical protein
LOC_Os10g34500Os.46659.1.S1_at11/1110+18074647..18078245expressed protein
LOC_Os10g34500Os.46659.1.S1_x_at10/1110+18074647..18078245expressed protein
LOC_Os10g34520Os.12368.1.S1_at11/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34520OsAffx.28592.1.S1_at2/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34529NANA10+18086905..18087850hypothetical protein
LOC_Os10g34540Os.46560.1.S1_at11/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34540Os.46560.2.S1_x_at10/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34550OsAffx.8005.1.S1_at11/1110+18096523..18097989hypothetical protein
LOC_Os10g34560OsAffx.30672.1.S1_at11/1110+18099878..18100504hypothetical protein
LOC_Os10g34570OsAffx.8003.1.S1_at7/1110+18103350..18103878hypothetical protein
LOC_Os10g34580Os.46513.1.S1_at11/1110+18104783..18108669FHA domain containing protein, expressed
LOC_Os10g34590Os.46054.1.S1_at11/1110+18109186..18112785Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007067biological_processmitosis
GO:0005634cellular_componentnucleus
GO:0005681cellular_componentspliceosome complex
GO:0005737cellular_componentcytoplasm
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12368.1.S1_at--877--3711Chr10:18084115..18084139 (25 bp)
CTAGCGGCAGTAGCTGAGACCATAA
LOC_Os10g34520
Os.12368.1.S1_at--626--4071Chr10:18084201..18084225 (25 bp)
CGAGCTGTATGATCCGTCGACGGTG
LOC_Os10g34520
Os.12368.1.S1_at--719--711Chr10:18084209..18084233 (25 bp)
ATGATCCGTCGACGGTGATGTTCTT
LOC_Os10g34520
Os.12368.1.S1_at--811--5811Chr10:18084333..18084357 (25 bp)
GACCGTCTACAGAGGTGCTCGCAAA
LOC_Os10g34520
Os.12368.1.S1_at--270--5691Chr10:18084385..18084409 (25 bp)
GACTACTCCACTAAATACCGTTACT
LOC_Os10g34520
Os.12368.1.S1_at--1044--3991Chr10:18084403..18084427 (25 bp)
CGTTACTAAGCTATATTTTGCCCCA
LOC_Os10g34520
Os.12368.1.S1_at--189--6131Chr10:18084438..18084462 (25 bp)
GAGTGGCCCTTAGTACAAGAGCTGT
LOC_Os10g34520
Os.12368.1.S1_at--940--1591Chr10:18084457..18084481 (25 bp)
AGCTGTAAGCTTATGGAGTTGTGGT
LOC_Os10g34520
Os.12368.1.S1_at--911--10631Chr10:18084513..18084537 (25 bp)
TTCGAAACTCGAGTGTCGGAACATA
LOC_Os10g34520
Os.12368.1.S1_at--146--7751Chr10:18084576..18084600 (25 bp)
GGTGTGGATACCAATCATCCATTAA
LOC_Os10g34520
Os.12368.1.S1_at--965--9731Chr10:18084604..18084628 (25 bp)
TCAATACTCTTTCCAGTCTTATAAG
LOC_Os10g34520
Target Sequence 
CTAGCGGCAGTAGCTGAGACCATAAAGAACTTTGCGGTCATCTACCTGGTCGACATCACCGAGGTTCCAGACTTCAACAC
CATGTACGAGCTGTATGATCCGTCGACGGTGATGTTCTTCTTCCGCAACAAGCACATCATGATTGATCTGGGGACAGGAA
ACAACAACAAGATCAACTGGGCCTTGAAGGACAAGCAGGAGTTCATCGACATTGTGGAGACCGTCTACAGAGGTGCTCGC
AAAGGGCGTGGTTTGGTGATTGCTCCCAAGGACTACTCCACTAAATACCGTTACTAAGCTATATTTTGCCCCACGCTGCC
GTNGAGTGGCCCTTAGTACAAGAGCTGTAAGCTTATGGAGTTGTGGTGGGGTGTTGTTGACTAAAAACTGTAATATTGTT
CGAAACTCGAGTGTCGGAACATAATTTACATGTCAATTGGTACATCAATGACAAGTTGATTGGTGTGGATACCAATCATC
CATTAATTATCAATACTCTTTCCAGTCTTATAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis