Browse Element(s) Details


OsAffx.8003.1.S1_at

Description tigr:9638.m03046
TID=OsAffx.8003.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g345707/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34520Os.12368.1.S1_at11/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34520OsAffx.28592.1.S1_at2/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34529NANA10+18086905..18087850hypothetical protein
LOC_Os10g34540Os.46560.1.S1_at11/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34540Os.46560.2.S1_x_at10/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34550OsAffx.8005.1.S1_at11/1110+18096523..18097989hypothetical protein
LOC_Os10g34560OsAffx.30672.1.S1_at11/1110+18099878..18100504hypothetical protein
LOC_Os10g34570OsAffx.8003.1.S1_at7/1110+18103350..18103878hypothetical protein
LOC_Os10g34580Os.46513.1.S1_at11/1110+18104783..18108669FHA domain containing protein, expressed
LOC_Os10g34590Os.46054.1.S1_at11/1110+18109186..18112785Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34602Os.46831.1.S1_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.3.S1_x_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_x_at9/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_at4/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34614Os.10059.1.S1_at11/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.10059.2.S1_at10/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.46831.2.S1_x_at1/1110+18121479..18124769expressed protein
LOC_Os10g34630NANA10+18127150..18130107retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8003.1.S1_at--935--3031Chr10:18103561..18103585 (25 bp)
AATCCGATTCGGTTCTTCGCATCGT
LOC_Os10g34570
OsAffx.8003.1.S1_at--599--6571Chr10:18103566..18103590 (25 bp)
GATTCGGTTCTTCGCATCGTCTCCA
LOC_Os10g34570
OsAffx.8003.1.S1_at--500--511Chr10:18103581..18103696 (25 bp)
ATCGTCTCCACCCAAGAGTCGTCGA
LOC_Os10g34570
OsAffx.8003.1.S1_at--637--1811Chr10:18103590..18103705 (25 bp)
ACCCAAGAGTCGTCGAGCCGGAAGA
LOC_Os10g34570
OsAffx.8003.1.S1_at--998--1031Chr10:18103822..18103846 (25 bp)
AGGTGCCTCAGGAGGATTCGCGCCT
LOC_Os10g34570
OsAffx.8003.1.S1_at--1124--6151Chr10:18103833..18103857 (25 bp)
GAGGATTCGCGCCTTCAAGGCCAGC
LOC_Os10g34570
OsAffx.8003.1.S1_at--391--10511Chr10:18103846..18103870 (25 bp)
TTCAAGGCCAGCTTGCTTGGCTTCT
LOC_Os10g34570
OsAffx.8003.1.S1_at--719--10551Chr10:18103858..18103882 (25 bp)
TTGCTTGGCTTCTCCGATTAAACCA
NONE
OsAffx.8003.1.S1_at--719--8491Chr10:18103863..18103887 (25 bp)
TGGCTTCTCCGATTAAACCAAGCAA
NONE
OsAffx.8003.1.S1_at--1042--5031Chr10:18103937..18103961 (25 bp)
GCAGATGATGACGTAGCCACGTAGT
NONE
OsAffx.8003.1.S1_at--832--1891Chr10:18103947..18103971 (25 bp)
ACGTAGCCACGTAGTGGATGGGAAA
NONE
Target Sequence 
AATCCGATTCGGTTCTTCGCATCGTCTCCACCCAAGAGTCGTCGAGCCGGAAGAAGAGGAGGTGCGGCGGCAACGGCGGC
GCCGGCGGCGAGCAGGAGGGGAAGCGGAGGAGGAGCGCGGCGGCGGCAGCGGGGAAGGACAGCGCGGAGATGGCCATCGA
GCGGGCGGAGAGGTGCCTCAGGAGGATTCGCGCCTTCAAGGCCAGCTTGCTTGGCTTCTCCGATTAAACCAAGCAACAAA
AAAAAAAAAAAACTTTGAAGCAAAAAAAAAGCTGGAAGAAAAATGGCAGATGATGACGTAGCCACGTAGTGGATGGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis