Browse Element(s) Details


OsAffx.30672.1.S1_at

Description gb:NM_197090.1
DB_XREF= gi:37535539
TID=OsAffx.30672.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0029C15.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3456011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34500Os.46659.1.S1_at11/1110+18074647..18078245expressed protein
LOC_Os10g34500Os.46659.1.S1_x_at10/1110+18074647..18078245expressed protein
LOC_Os10g34520Os.12368.1.S1_at11/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34520OsAffx.28592.1.S1_at2/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34529NANA10+18086905..18087850hypothetical protein
LOC_Os10g34540Os.46560.1.S1_at11/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34540Os.46560.2.S1_x_at10/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34550OsAffx.8005.1.S1_at11/1110+18096523..18097989hypothetical protein
LOC_Os10g34560OsAffx.30672.1.S1_at11/1110+18099878..18100504hypothetical protein
LOC_Os10g34570OsAffx.8003.1.S1_at7/1110+18103350..18103878hypothetical protein
LOC_Os10g34580Os.46513.1.S1_at11/1110+18104783..18108669FHA domain containing protein, expressed
LOC_Os10g34590Os.46054.1.S1_at11/1110+18109186..18112785Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34602Os.46831.1.S1_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.3.S1_x_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_x_at9/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_at4/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34614Os.10059.1.S1_at11/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.10059.2.S1_at10/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.46831.2.S1_x_at1/1110+18121479..18124769expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30672.1.S1_at--1142--3391Chr10:18100418..18100442 (25 bp)
CAGCTTCTTCGGCTCATGGATGGGC
LOC_Os10g34560
OsAffx.30672.1.S1_at--844--10611Chr10:18100411..18100435 (25 bp)
TTCGGCTCATGGATGGGCCCCGTCG
LOC_Os10g34560
OsAffx.30672.1.S1_at--1058--7991Chr10:18100401..18100425 (25 bp)
GGATGGGCCCCGTCGTCTCCATCGA
LOC_Os10g34560
OsAffx.30672.1.S1_at--1089--1891Chr10:18100299..18100323 (25 bp)
ACGTCGCCGTGCGGGTCAAGATGCA
LOC_Os10g34560
OsAffx.30672.1.S1_at--540--3231Chr10:18100283..18100307 (25 bp)
CAAGATGCAGCGTTTCCACCTCGCG
LOC_Os10g34560
OsAffx.30672.1.S1_at--894--3931Chr10:18100032..18100056 (25 bp)
CGGAGATCGGAAGACGACCCTGGCT
LOC_Os10g34560
OsAffx.30672.1.S1_at--396--8491Chr10:18100012..18100036 (25 bp)
TGGCTCGATGCTGAGCAACGGGTTT
LOC_Os10g34560
OsAffx.30672.1.S1_at--731--5951Chr10:18100000..18100024 (25 bp)
GAGCAACGGGTTTCGCGCAATGTGC
LOC_Os10g34560
OsAffx.30672.1.S1_at--130--4371Chr10:18099971..18099995 (25 bp)
CCACGGCGTCGCTCGGCCATGGGAA
LOC_Os10g34560
OsAffx.30672.1.S1_at--9--4411Chr10:18099956..18099980 (25 bp)
GCCATGGGAATTCAACGGCGACAGC
LOC_Os10g34560
OsAffx.30672.1.S1_at--73--4631Chr10:18099909..18099933 (25 bp)
GCGTGCACCGTCGTGAAGCAGTAGC
LOC_Os10g34560
Target Sequence 
CAGCTTCTTCGGCTCATGGATGGGCCCCGTCGTCTCCATCGACGGCGTCACCGCCACGGGGCTCGACGCCGCCGGCGCCG
CTGGGAACGCCACCACCACCACCATCTCCCCGTCCTTCGACGTCGCCGTGCGGGTCAAGATGCAGCGTTTCCACCTCGCG
CCCGGAGGCGTACGCGAGGGGCTCCGTCGCCGTGTCGTGCGCGGGGGGCGCGGTCACCGCGCGCGGCGAGCTCCCGGACT
TCCTGCTCTACGTCACCTCGCCGTCCGTGGTGTCGGCGACGGCGCGCGCCGCGCCGCCCACCACCGCGCTGTCCGCCGGC
GCGCGCGGCCGCCTCGCCGGCGAGCTGCGGCGCGGGGAGGTGTGGCTGGACGTGTCCGTGTCGTACCGGAGATCGGAAGA
CGACCCTGGCTCGATGCTGAGCAACGGGTTTCGCGCAATGTGCGCCGCCACGGCGTCGCTCGGCCATGGGAATTCAACGG
CGACAGCGGTGGCGGCGGCGGCGGCGGCGGCGTGCACCGTCGTGAAGCAGTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis