Browse Element(s) Details


Os.46560.2.S1_x_at

Description gb:NM_197088.1
DB_XREF= gi:37535535
TID=Os.46560.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46560 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative tetratricopeptide repeat protein (OSJNBa0029C15.16), mRNA.
PROD=putative tetratricopeptide repeat protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3454010/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34490OsAffx.25492.1.S1_at11/1110+18072612..18073671hypothetical protein
LOC_Os10g34490OsAffx.19217.1.S1_x_at3/1110+18072612..18073671hypothetical protein
LOC_Os10g34500Os.46659.1.S1_at11/1110+18074647..18078245expressed protein
LOC_Os10g34500Os.46659.1.S1_x_at10/1110+18074647..18078245expressed protein
LOC_Os10g34520Os.12368.1.S1_at11/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34520OsAffx.28592.1.S1_at2/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34529NANA10+18086905..18087850hypothetical protein
LOC_Os10g34540Os.46560.1.S1_at11/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34540Os.46560.2.S1_x_at10/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34550OsAffx.8005.1.S1_at11/1110+18096523..18097989hypothetical protein
LOC_Os10g34560OsAffx.30672.1.S1_at11/1110+18099878..18100504hypothetical protein
LOC_Os10g34570OsAffx.8003.1.S1_at7/1110+18103350..18103878hypothetical protein
LOC_Os10g34580Os.46513.1.S1_at11/1110+18104783..18108669FHA domain containing protein, expressed
LOC_Os10g34590Os.46054.1.S1_at11/1110+18109186..18112785Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34602Os.46831.1.S1_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.3.S1_x_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_x_at9/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_at4/1110+18116465..18119997csAtPR5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46560.2.S1_x_at--173--6231NONE
GAGGCCGTGCACCAGCAAAGCTAGA
NONE
Os.46560.2.S1_x_at--987--10711Chr10:18094096..18094120 (25 bp)
TTGCTGCTGAGCTGGAATCTGCCGA
LOC_Os10g34540
Os.46560.2.S1_x_at--602--5251Chr10:18094110..18094134 (25 bp)
GAATCTGCCGAAGACATACGCTCCG
LOC_Os10g34540
Os.46560.2.S1_x_at--1005--311Chr10:18094125..18094149 (25 bp)
ATACGCTCCGCATGTCATTCAAATC
LOC_Os10g34540
Os.46560.2.S1_x_at--332--3051Chr10:18094146..18094170 (25 bp)
AATCGTGCTGTATGCTTCTTGAAGT
LOC_Os10g34540
Os.46560.2.S1_x_at--321--2731Chr10:18094673..18094697 (25 bp)
AAGCACTTGAGCTGAATCCTTCATA
LOC_Os10g34540
Os.46560.2.S1_x_at--419--331Chr10:18094695..18094719 (25 bp)
ATACTTGAAAGCCTTGCTCCGGAGG
LOC_Os10g34540
Os.46560.2.S1_x_at--710--8911Chr10:18094918..18094942 (25 bp)
TGAGCTGGATCCTTCAAATGAACAA
LOC_Os10g34540
Os.46560.2.S1_x_at--117--2791Chr10:18094946..18094970 (25 bp)
AAGAGATCACTGTTCCGACTGGAGC
LOC_Os10g34540
Os.46560.2.S1_x_at--902--5731Chr10:18094962..18094986 (25 bp)
GACTGGAGCCACTGGCAGCTGAGAA
LOC_Os10g34540
Os.46560.2.S1_x_at--60--4891Chr10:18095405..18095429 (25 bp)
GCTTTGGGATGAGCGTCGACAATTT
LOC_Os10g34540
Target Sequence 
GAGGCCGTGCACCAGCAAAGCTAGAAGCCAAGCAAATGATGCAAAGGCAGAAGGGAACAAGTTTTTTGGTGCTGGAGAAT
ATGAGAGGGCATTGTCGCAATATGAGACAGCTTTGCAAATTGCTGCTGAGCTGGAATCTGCCGAAGACATACGCTCCGCA
TGTCATTCAAATCGTGCTGTATGCTTCTTGAAGTTGGGCAAATATGATGAAACAATCAAAGAATGCACCAAAGCACTTGA
GCTGAATCCTTCATACTTGAAAGCCTTGCTCCGGAGGGGAGAAGCACATGAAAAGCTTGAACACTATGATGAAGCTATTG
CTGATATGAAAAAAATTATTGAGCTGGATCCTTCAAATGAACAAGCTAAGAGATCACTGTTCCGACTGGAGCCACTGGCA
GCTGAGAAAAGGGAAAAGATGAAGGAAGAGATGATCGGAAAGCTCAAAGATCTGGGGAATTCTGTGCTCGGGCGCTTTGG
GATGAGCGTCGACAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46560.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis