Browse Element(s) Details


OsAffx.19217.1.S1_x_at

Description gb:NM_193102.1
DB_XREF= gi:34913287
GEN=P0519E12.22
TID=OsAffx.19217.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0519E12.22 (P0519E12.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g344903/11hypothetical protein
LOC_Os11g043802/11phosphate translocator, putative, expressed
LOC_Os04g502122/11hypothetical protein
LOC_Os12g041702/11phosphate translocator, putative, expressed
LOC_Os03g189901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34440OsAffx.20238.1.S1_at10/1110+18045989..18048248expressed protein
LOC_Os10g34450OsAffx.6862.1.S1_at11/1110+18052713..18053692hypothetical protein
LOC_Os10g34470Os.54752.1.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.2.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.4.S1_s_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34480Os.10785.3.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34480OsAffx.30670.1.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34490OsAffx.25492.1.S1_at11/1110+18072612..18073671hypothetical protein
LOC_Os10g34490OsAffx.19217.1.S1_x_at3/1110+18072612..18073671hypothetical protein
LOC_Os10g34500Os.46659.1.S1_at11/1110+18074647..18078245expressed protein
LOC_Os10g34500Os.46659.1.S1_x_at10/1110+18074647..18078245expressed protein
LOC_Os10g34520Os.12368.1.S1_at11/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34520OsAffx.28592.1.S1_at2/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34529NANA10+18086905..18087850hypothetical protein
LOC_Os10g34540Os.46560.1.S1_at11/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34540Os.46560.2.S1_x_at10/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34550OsAffx.8005.1.S1_at11/1110+18096523..18097989hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19217.1.S1_x_at--245--7473Chr11:21637516..21637540 (25 bp)
GTGTGTCAACAAGAAGTAACAACAA
NONE
OsAffx.19217.1.S1_x_at--889--6311NONE
GATGAATGAGGTTGCTCCTCTTCCT
NONE
OsAffx.19217.1.S1_x_at--639--5271NONE
GAATGAGGTTGCTCCTCTTCCTCCT
NONE
OsAffx.19217.1.S1_x_at--237--9291Chr06:27042430..27042454 (25 bp)
TCCGCTGGCCGTACGCTTGCCTGCC
NONE
OsAffx.19217.1.S1_x_at--32--9231Chr06:27042331..27042355 (25 bp)
TCCATGCTCAACATGCTCAGCTCGG
NONE
OsAffx.19217.1.S1_x_at--52--631Chr06:27042328..27042352 (25 bp)
ATGCTCAACATGCTCAGCTCGGCAT
NONE
OsAffx.19217.1.S1_x_at--803--4831Chr06:27042326..27042350 (25 bp)
GCTCAACATGCTCAGCTCGGCATCT
NONE
OsAffx.19217.1.S1_x_at--921--7896Chr12:1751463..1751487 (25 bp)
GGTTCGACGCGTTCGGCGTCATGCT
LOC_Os12g04170
OsAffx.19217.1.S1_x_at--1115--1815Chr12:1751469..1751493 (25 bp)
ACGCGTTCGGCGTCATGCTGCAGCT
LOC_Os12g04170
OsAffx.19217.1.S1_x_at--541--10612Chr10:18073372..18073396 (25 bp)
TTCGGCGTCATGCTGCAGCTCGTCG
LOC_Os10g34490
OsAffx.19217.1.S1_x_at--302--9611Chr06:27042158..27042223 (25 bp)
TCATCCAGATACTGATCACATCGCG
NONE
Target Sequence 
GTGTGTCAACAAGAAGTAACAACAAGAAGANGGCATACAGAACAAGCNGCGCACAATTTTCCTGGNTTACCCGGGAGCCG
TTGTCNTTTGAGTGGTTCAANGGAGTGATGAATGAGGTTGCTCCTCTTCCTCCTCCAGCTGCGCCGGTGCCGCCGCGGAT
GCTGTCGCCGCTCCGCTCCACTCCCCTGGCCGCTCGCTCGCCGCCGCTCCGCTCCGCTGGCCGTACGCTTGCCTGCCGCC
GCCGCTCTGCTCCGCCGTCCGCCCGCTCGCTGCAACGTTCGCCCGCCTTCCGCGACTCCTTCCGCAGCGCCTCCATGCTC
AACATGCTCAGCTCGGCATCTCCGCGGGCGTCGCCGTTGCCGCCTACGGTGAGGCGCGGTTCGACGCGTTCGGCGTCATG
CTGCAGCTCGTCGCCGTCGCCGCCGAGGCCACACGGCTCGTGCTCATCCAGATACTGATCACATCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19217.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis