Browse Element(s) Details


Os.10785.4.S1_s_at

Description gb:NM_197081.1
DB_XREF= gi:37535521
TID=Os.10785.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10785 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative HD domain protein (OSJNBa0029C15.4), mRNA.
PROD=putative HD domain protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3447011/11HD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34430OsAffx.8007.1.S1_at11/1110+18030878..18043143Type III restriction enzyme, res subunit family protein, expressed
LOC_Os10g34440OsAffx.20238.1.S1_at10/1110+18045989..18048248expressed protein
LOC_Os10g34450OsAffx.6862.1.S1_at11/1110+18052713..18053692hypothetical protein
LOC_Os10g34470Os.54752.1.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.2.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.4.S1_s_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34480Os.10785.3.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34480OsAffx.30670.1.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34490OsAffx.25492.1.S1_at11/1110+18072612..18073671hypothetical protein
LOC_Os10g34490OsAffx.19217.1.S1_x_at3/1110+18072612..18073671hypothetical protein
LOC_Os10g34500Os.46659.1.S1_at11/1110+18074647..18078245expressed protein
LOC_Os10g34500Os.46659.1.S1_x_at10/1110+18074647..18078245expressed protein
LOC_Os10g34520Os.12368.1.S1_at11/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34520OsAffx.28592.1.S1_at2/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34529NANA10+18086905..18087850hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10785.4.S1_s_at--991--8011Chr10:18060349..18060373 (25 bp)
GGAGGACTTTGTGGCTGAATTCTAT
LOC_Os10g34470
Os.10785.4.S1_s_at--963--5031Chr10:18060387..18060411 (25 bp)
GCAGAGCTTGAAGTTGACCAACCAG
LOC_Os10g34470
Os.10785.4.S1_s_at--252--8451Chr10:18060447..18060471 (25 bp)
TGGCCAACCAACAACAACTCATATT
LOC_Os10g34470
Os.10785.4.S1_s_at--1060--2531Chr10:18060462..18060486 (25 bp)
AACTCATATTGCTAGTCGTCTACTT
LOC_Os10g34470
Os.10785.4.S1_s_at--679--7191Chr10:18060476..18060500 (25 bp)
GTCGTCTACTTGGTGACATTAGCAT
LOC_Os10g34470
Os.10785.4.S1_s_at--979--5671Chr10:18060490..18060514 (25 bp)
GACATTAGCATGTTTTGTTGCTGAT
LOC_Os10g34470
Os.10785.4.S1_s_at--224--8811Chr10:18060505..18060529 (25 bp)
TGTTGCTGATATGTTAAGCCATGCA
LOC_Os10g34470
Os.10785.4.S1_s_at--1143--2391Chr10:18060532..18060556 (25 bp)
AAAACGAGGGATAAAGCACACTTGA
LOC_Os10g34470
Os.10785.4.S1_s_at--497--2731Chr10:18060545..18060569 (25 bp)
AAGCACACTTGAGTGGCCAAACCAC
LOC_Os10g34470
Os.10785.4.S1_s_at--639--8431Chr10:18060559..18060583 (25 bp)
GGCCAAACCACTGAATAATGCTCCT
LOC_Os10g34470
Os.10785.4.S1_s_at--207--4371Chr10:18060566..18060590 (25 bp)
CCACTGAATAATGCTCCTCAACAGG
LOC_Os10g34470
Target Sequence 
GGAGGACTTTGTGGCTGAATTCTATGAAGAGTGGAGTGGCAGAGCTTGAAGTTGACCAACCAGGTTATGGGCTGTTGGTC
TGTGGCATAGCTTGAAGTTGGCCAACCAACAACAACTCATATTGCTAGTCGTCTACTTGGTGACATTAGCATGTTTTGTT
GCTGATATGTTAAGCCATGCAAAAAAACGAGGGATAAAGCACACTTGAGTGGCCAAACCACTGAATAATGCTCCTCAACA
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10785.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis