Browse Element(s) Details


OsAffx.30670.1.S1_at

Description tigr:9638.m03037
TID=OsAffx.30670.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cytochrome P450 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3448011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34430OsAffx.8007.1.S1_at11/1110+18030878..18043143Type III restriction enzyme, res subunit family protein, expressed
LOC_Os10g34440OsAffx.20238.1.S1_at10/1110+18045989..18048248expressed protein
LOC_Os10g34450OsAffx.6862.1.S1_at11/1110+18052713..18053692hypothetical protein
LOC_Os10g34470Os.54752.1.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.2.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.4.S1_s_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34480Os.10785.3.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34480OsAffx.30670.1.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34490OsAffx.25492.1.S1_at11/1110+18072612..18073671hypothetical protein
LOC_Os10g34490OsAffx.19217.1.S1_x_at3/1110+18072612..18073671hypothetical protein
LOC_Os10g34500Os.46659.1.S1_at11/1110+18074647..18078245expressed protein
LOC_Os10g34500Os.46659.1.S1_x_at10/1110+18074647..18078245expressed protein
LOC_Os10g34520Os.12368.1.S1_at11/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34520OsAffx.28592.1.S1_at2/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34529NANA10+18086905..18087850hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0008393molecular_functionfatty acid (omega-1)-hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30670.1.S1_at--621--8971Chr10:18063312..18063336 (25 bp)
TGAAAAATAAATCTCCCGTCTCTGC
LOC_Os10g34480
OsAffx.30670.1.S1_at--295--3991Chr10:18063296..18063320 (25 bp)
CGTCTCTGCACTTATACACTATACA
LOC_Os10g34480
OsAffx.30670.1.S1_at--737--7431Chr10:18063243..18063267 (25 bp)
GTGTATGATATTATCTCCGTTCTAA
LOC_Os10g34480
OsAffx.30670.1.S1_at--538--5931Chr10:18063090..18063114 (25 bp)
GAGCATGAATGTGTCGTGTCCGAAA
LOC_Os10g34480
OsAffx.30670.1.S1_at--260--10231Chr10:18063053..18063077 (25 bp)
TATTGTCGTTTGGTAGAGCTAGCTC
LOC_Os10g34480
OsAffx.30670.1.S1_at--380--9211Chr10:18063018..18063042 (25 bp)
TGCCAAGTTCTTCCCAAAATGCGTG
LOC_Os10g34480
OsAffx.30670.1.S1_at--167--5351Chr10:18062971..18062995 (25 bp)
GAAGAGTTGGTAGCCGGCAGCTCCT
LOC_Os10g34480
OsAffx.30670.1.S1_at--626--9251Chr10:18062950..18062974 (25 bp)
TCCTAGCTAGCACAGTACCATCACT
LOC_Os10g34480
OsAffx.30670.1.S1_at--989--9791Chr10:18062884..18062908 (25 bp)
TAACGTACTCATCAGTTTGCACAGT
LOC_Os10g34480
OsAffx.30670.1.S1_at--739--6851Chr10:18062870..18062894 (25 bp)
GTTTGCACAGTAGTCTTCATGAGAA
LOC_Os10g34480
OsAffx.30670.1.S1_at--543--8771Chr10:18062840..18062864 (25 bp)
TGTTTTAGGCATCAACGTGGTTTTT
LOC_Os10g34480
Target Sequence 
TGAAAAATAAATCTCCCGTCTCTGCACTTATACACTATACATATAATACGCTGAGAGAAATATGTGTGTGTGTATGATAT
TATCTCCGTTCTAAAATAGAGTAATTTTTTATTATGAATCTTGATAGATATTCTGTATTTATAGTTAGAAATGTTTACTT
TAAAAAATGAGGGGAGTAGAGGAGAGAAAGAAAAGACATGAAGTGCGTATGCATGTCATGGTGAGCATGAATGTGTCGTG
TCCGAAAGATTGTGTTTTGTATTGTCGTTTGGTAGAGCTAGCTCATCCAAATAATGCCAAGTTCTTCCCAAAATGCGTGA
GTGATATAACTACATCTGCATGAAGAGTTGGTAGCCGGCAGCTCCTAGCTAGCACAGTACCATCACTAGTAGTACCACAT
GAAACAAACAGCTATTAGTAGTACGGATTAACGTACTCATCAGTTTGCACAGTAGTCTTCATGAGAATATGTTGTTTTAG
GCATCAACGTGGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis