Browse Element(s) Details


Os.54752.1.S1_at

Description gb:AK106675.1
DB_XREF= gi:32991884
TID=Os.54752.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A07, full insert sequence.
FL= gb:AK106675.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3447011/11HD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34430OsAffx.8007.1.S1_at11/1110+18030878..18043143Type III restriction enzyme, res subunit family protein, expressed
LOC_Os10g34440OsAffx.20238.1.S1_at10/1110+18045989..18048248expressed protein
LOC_Os10g34450OsAffx.6862.1.S1_at11/1110+18052713..18053692hypothetical protein
LOC_Os10g34470Os.54752.1.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.2.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.4.S1_s_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34480Os.10785.3.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34480OsAffx.30670.1.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34490OsAffx.25492.1.S1_at11/1110+18072612..18073671hypothetical protein
LOC_Os10g34490OsAffx.19217.1.S1_x_at3/1110+18072612..18073671hypothetical protein
LOC_Os10g34500Os.46659.1.S1_at11/1110+18074647..18078245expressed protein
LOC_Os10g34500Os.46659.1.S1_x_at10/1110+18074647..18078245expressed protein
LOC_Os10g34520Os.12368.1.S1_at11/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34520OsAffx.28592.1.S1_at2/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34529NANA10+18086905..18087850hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54752.1.S1_at--1035--10751Chr10:18059617..18059641 (25 bp)
TTGACTGCCTTTTTTGGTCTCATGT
LOC_Os10g34470
Os.54752.1.S1_at--53--2291Chr10:18059651..18059675 (25 bp)
AAATGCTCTGTGTTCGAATCTTTCC
LOC_Os10g34470
Os.54752.1.S1_at--327--5251Chr10:18059666..18059690 (25 bp)
GAATCTTTCCCTAAAACACCTGCAG
LOC_Os10g34470
Os.54752.1.S1_at--1032--10451Chr10:18059897..18059921 (25 bp)
TTACCGCTGTCCTAGTTGAAGCCTA
LOC_Os10g34470
Os.54752.1.S1_at--833--10191Chr10:18059938..18059962 (25 bp)
TATTTGGACCTATTGAACTCAGTAC
LOC_Os10g34470
Os.54752.1.S1_at--778--7691Chr10:18059984..18060008 (25 bp)
GGGTCTTATCTTCATCAATTTACAC
LOC_Os10g34470
Os.54752.1.S1_at--619--3151Chr10:18060029..18060053 (25 bp)
AATTCTGCTTACTGATGCTCATGGT
LOC_Os10g34470
Os.54752.1.S1_at--366--4991Chr10:18060069..18060093 (25 bp)
GCATGCATCTGTACATTGGCGAAGT
LOC_Os10g34470
Os.54752.1.S1_at--506--7011Chr10:18060114..18060138 (25 bp)
GTACTAGTCATCAATACTCCCTGGA
LOC_Os10g34470
Os.54752.1.S1_at--235--6591Chr10:18060139..18060163 (25 bp)
GATTCCTATTATACCTTCTGATGGG
LOC_Os10g34470
Os.54752.1.S1_at--366--7591Chr10:18060161..18060185 (25 bp)
GGGCTAATAATCACTCATTGTCTTT
LOC_Os10g34470
Target Sequence 
TTGACTGCCTTTTTTGGTCTCATGTAGTATGAATAAATGCTCTGTGTTCGAATCTTTCCCTAAAACACCTGCAGGTATTG
CAAGATGTTTTACGTATGGTGGGAGCAAGAAAAACACATTGCATGATCCTAAGATACTGCCGCGTGATAATTTGTCAAAG
GAGAAATACATGTCCAAGGATGAAAAACAGACATCAATTAATCATTTCCATGAGAAGCTATTTAAGTTGAAGGACATGAT
GAAGACAGAGGTAGGTGATGAGTTATGTAGACATGTGTTCTTACCGCTGTCCTAGTTGAAGCCTATGGAGAAAGCATTAA
ATATTTGGACCTATTGAACTCAGTACTAAGAGTAGTAGATCTATGTTGGGTCTTATCTTCATCAATTTACACGTGTTAAG
TACATGAAAGAAAATTCTGCTTACTGATGCTCATGGTATATCTTCTGATTTAGCATGCATCTGTACATTGGCGAAGTGTA
TGAAAAGTGGATTCTGTGTACTAGTCATCAATACTCCCTGGAGATTCCTATTATACCTTCTGATGGGCTAATAATCACTC
ATTGTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis