Browse Element(s) Details


OsAffx.8007.1.S1_at

Description tigr:9638.m03031
TID=OsAffx.8007.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative RNA helicase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3443011/11Type III restriction enzyme, res subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34390Os.46063.1.S1_at11/1110+18003257..18010180Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g34400Os.11918.1.S1_at11/1110+18013400..18022397expressed protein
LOC_Os10g34420Os.18109.1.S1_at11/1110+18027729..18030287LysM domain containing protein, expressed
LOC_Os10g34430OsAffx.8007.1.S1_at11/1110+18030878..18043143Type III restriction enzyme, res subunit family protein, expressed
LOC_Os10g34440OsAffx.20238.1.S1_at10/1110+18045989..18048248expressed protein
LOC_Os10g34450OsAffx.6862.1.S1_at11/1110+18052713..18053692hypothetical protein
LOC_Os10g34470Os.54752.1.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.2.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.4.S1_s_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34480Os.10785.3.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34480OsAffx.30670.1.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006396biological_processRNA processing
GO:0009880biological_processembryonic pattern specification
GO:0009908biological_processflower development
GO:0010050biological_processvegetative phase change
GO:0010098biological_processsuspensor development
GO:0010228biological_processvegetative to reproductive phase transition
GO:0030422biological_processRNA interference, production of siRNA
GO:0031053biological_processprimary microRNA processing
GO:0035279biological_processmiRNA-mediated gene silencing, mRNA cleavage
GO:0005634cellular_componentnucleus
GO:0003723molecular_functionRNA binding
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0004525molecular_functionribonuclease III activity
GO:0005515molecular_functionprotein binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8007.1.S1_at--869--8031Chr10:18041559..18041583 (25 bp)
GGAGATTTTCGAGCCATTGCTTTCT
LOC_Os10g34430
OsAffx.8007.1.S1_at--1022--3671Chr10:18041578..18041602 (25 bp)
CTTTCTCCACTGATTACACCTGATA
LOC_Os10g34430
OsAffx.8007.1.S1_at--196--91Chr10:18041610..18041634 (25 bp)
ATTGCCACCTTACCGTGAGTTGCTG
LOC_Os10g34430
OsAffx.8007.1.S1_at--782--6671Chr10:18041628..18041652 (25 bp)
GTTGCTGGAGCTATGCAGTCACATT
LOC_Os10g34430
OsAffx.8007.1.S1_at--368--6031Chr10:18041704..18041728 (25 bp)
GAGATGTCACTGCAACTACGAGATG
LOC_Os10g34430
OsAffx.8007.1.S1_at--331--2351Chr10:18041779..18041803 (25 bp)
AAAGCAGCATCTCGTATTTTGGCAG
LOC_Os10g34430
OsAffx.8007.1.S1_at--835--7931Chr10:18042043..18042067 (25 bp)
GGATATCGTGACTTCAGATCTTCAG
LOC_Os10g34430
OsAffx.8007.1.S1_at--344--5611Chr10:18042076..18042380 (25 bp)
GACAAGTTTGTGCTTCCACTCAAAA
LOC_Os10g34430
OsAffx.8007.1.S1_at--387--8531Chr10:18042391..18042415 (25 bp)
TGGACCTCGAAGTGCGCTTTTCAAG
LOC_Os10g34430
OsAffx.8007.1.S1_at--247--7531Chr10:18042433..18042457 (25 bp)
GTGGCCAATGCCAGAATTCGAATTT
LOC_Os10g34430
OsAffx.8007.1.S1_at--824--8771Chr10:18042627..18042651 (25 bp)
TGTTTCGACAATCACCTTGCACATA
LOC_Os10g34430
Target Sequence 
GGAGATTTTCGAGCCATTGCTTTCTCCACTGATTACACCTGATAAGCTTGCATTGCCACCTTACCGTGAGTTGCTGGAGC
TATGCAGTCACATTGGTTGCTTCTTAAATTCAAAATGCACCAGTAAAGGAGAAGAAGTAATTATAGAGATGTCACTGCAA
CTACGAGATGAGCTGCTGGTAGCACAAGGGCATGACAGAAACAAAAAGAGGGCAAAGGCAAAAGCAGCATCTCGTATTTT
GGCAGATCTTAAGCAGCAACAGGGTCTTTCAATTAAACAATGTTTGTCCAAGGCTAAACAGCTGGATATCGTGACTTCAG
ATCTTCAGTTTGACTTGACAAGTTTGTGCTTCCACTCAAAATGGAGAAAGGTGGACCTCGAAGTGCGCTTTTCAAGCTAT
GCAAGATTTTGCAGTGGCCAATGCCAGAATTCGAATTTGTGGAACAAAGGTTCAGGACTCCTATTGTTATGGATGGGGCG
ACAACAACAAACTTCAATAGCTTTGTTTCGACAATCACCTTGCACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis