Browse Element(s) Details


Os.46063.1.S1_at

Description gb:AK063971.1
DB_XREF= gi:32973989
TID=Os.46063.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46063 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0029C15.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-B05, full insert sequence.
FL= gb:AK101467.1 gb:AK063971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3439011/11Uncharacterized ACR, COG1678 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34340OsAffx.30669.1.S1_at11/1110+17979450..17981818F-box domain containing protein
LOC_Os10g34350Os.27128.1.A1_a_at11/1110+17982248..17984720aminotransferase, classes I and II family protein, expressed
LOC_Os10g34360Os.168.1.S1_at11/1110+17986723..17989063Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os10g34370Os.46660.1.S1_x_at11/1110+17989365..17990845expressed protein
LOC_Os10g34380Os.23309.1.S1_a_at11/1110+17991518..18002175FF domain containing protein, expressed
LOC_Os10g34390Os.46063.1.S1_at11/1110+18003257..18010180Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g34400Os.11918.1.S1_at11/1110+18013400..18022397expressed protein
LOC_Os10g34420Os.18109.1.S1_at11/1110+18027729..18030287LysM domain containing protein, expressed
LOC_Os10g34430OsAffx.8007.1.S1_at11/1110+18030878..18043143Type III restriction enzyme, res subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46063.1.S1_at--279--7491Chr10:18003792..18003816 (25 bp)
GTGGTGCAGGGCTATTACCTTGTGA
LOC_Os10g34390
Os.46063.1.S1_at--513--10831Chr10:18003773..18003797 (25 bp)
TTGTGAGCCTTTCCAGAGTAGCCTT
LOC_Os10g34390
Os.46063.1.S1_at--381--1171Chr10:18003757..18003781 (25 bp)
AGTAGCCTTCGATGGGTACTTGCAG
LOC_Os10g34390
Os.46063.1.S1_at--29--2071Chr10:18003740..18003764 (25 bp)
ACTTGCAGGTTATACCCGGTGTGTA
LOC_Os10g34390
Os.46063.1.S1_at--952--151Chr10:18003716..18003740 (25 bp)
ATTATGGAAACGTAGCCGCCACAGC
LOC_Os10g34390
Os.46063.1.S1_at--553--5191Chr10:18003661..18003685 (25 bp)
GCAATCTGCTGAGAACCTGTGGTTT
LOC_Os10g34390
Os.46063.1.S1_at--81--10651Chr10:18003636..18003660 (25 bp)
TTCCTTGGGTTCTCGAACTGGGAAT
LOC_Os10g34390
Os.46063.1.S1_at--861--5351Chr10:18003564..18003588 (25 bp)
GAAGAGCCTATCGAGCATTTGGTCT
LOC_Os10g34390
Os.46063.1.S1_at--427--7671Chr10:18003479..18003503 (25 bp)
GGGTTCCCGAATTGCAAGTGTTCCA
LOC_Os10g34390
Os.46063.1.S1_at--339--10131Chr10:18003430..18003454 (25 bp)
TATGACGTTGTACTGCACTCTTTTT
LOC_Os10g34390
Os.46063.1.S1_at--164--2031Chr10:18003356..18003380 (25 bp)
ACTACTGAACTGTACTGCTTTCTTT
LOC_Os10g34390
Target Sequence 
GTGGTGCAGGGCTATTACCTTGTGAGCCTTTCCAGAGTAGCCTTCGATGGGTACTTGCAGGTTATACCCGGTGTGTATTA
TGGAAACGTAGCCGCCACAGCCCAGGTCACCAGACGAATCAAATCAGGGGAGCAATCTGCTGAGAACCTGTGGTTTTTCC
TTGGGTTCTCGAACTGGGAATACAGTCAACTATTTGATGAACTATCTGAAGGAGCTTGGCAAGTGAGTGAAGAGCCTATC
GAGCATTTGGTCTGGCCAGAGAATTAATTAGGGCATTCCTCTTCTATTTTTAGAGAATAGACTAGAGTTTTGAGGGTTCC
CGAATTGCAAGTGTTCCATGCACATACATGCTGACACTGCAATATGACGTTGTACTGCACTCTTTTTTTTTTTTGGATCA
GACAAGACAGCATTACACTAACAGTTTTGATATTTCTACTACTGAACTGTACTGCTTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis