Browse Element(s) Details


Os.11918.1.S1_at

Description gb:CF312665
DB_XREF= gi:33684426
DB_XREF=ABF--08-I06.g1
CLONE=ABF--08-I06
TID=Os.11918.1
CNT=12
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.11918 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0029C15.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3440011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34360Os.168.1.S1_at11/1110+17986723..17989063Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os10g34370Os.46660.1.S1_x_at11/1110+17989365..17990845expressed protein
LOC_Os10g34380Os.23309.1.S1_a_at11/1110+17991518..18002175FF domain containing protein, expressed
LOC_Os10g34390Os.46063.1.S1_at11/1110+18003257..18010180Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g34400Os.11918.1.S1_at11/1110+18013400..18022397expressed protein
LOC_Os10g34420Os.18109.1.S1_at11/1110+18027729..18030287LysM domain containing protein, expressed
LOC_Os10g34430OsAffx.8007.1.S1_at11/1110+18030878..18043143Type III restriction enzyme, res subunit family protein, expressed
LOC_Os10g34440OsAffx.20238.1.S1_at10/1110+18045989..18048248expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11918.1.S1_at--183--3051Chr10:18021827..18021851 (25 bp)
GAATGTACATAATCGTCTTCGTTAA
LOC_Os10g34400
Os.11918.1.S1_at--62--5391Chr10:18021865..18021889 (25 bp)
GAAGAATTGCGCAACATCACATTCC
LOC_Os10g34400
Os.11918.1.S1_at--24--391Chr10:18021880..18021904 (25 bp)
ATCACATTCCTTTTCTTTGGAGAGA
LOC_Os10g34400
Os.11918.1.S1_at--701--2992Chr10:18021914..18021938 (25 bp)
AATGAGGACTTGAGCGGCGGCATCT
LOC_Os10g34400
Os.11918.1.S1_at--412--451Chr10:18021942..18021966 (25 bp)
ATCTCACTGGAAGATGCCACTTTTA
LOC_Os10g34400
Os.11918.1.S1_at--1094--5351Chr10:18021995..18022019 (25 bp)
GAAGAGTGAACTCGTTGTTCCATTT
LOC_Os10g34400
Os.11918.1.S1_at--372--10511Chr10:18022023..18022047 (25 bp)
TTCAGCTCACCAACCCGGTTTGGAG
LOC_Os10g34400
Os.11918.1.S1_at--59--891Chr10:18022052..18022076 (25 bp)
AGGCCAGGTCCAAGATAGTTTAGTA
LOC_Os10g34400
Os.11918.1.S1_at--205--6831Chr10:18022130..18022154 (25 bp)
GTTTCAACTGTTGCTTTTTCGAGCC
LOC_Os10g34400
Os.11918.1.S1_at--358--4891Chr10:18022142..18022166 (25 bp)
GCTTTTTCGAGCCATATCACACAGG
LOC_Os10g34400
Os.11918.1.S1_at--490--7591Chr10:18022241..18022265 (25 bp)
GGGCACTTCGTGTTTTGTAAATCCA
LOC_Os10g34400
Target Sequence 
GAATGTACATAATCGTCTTCGTTAAAAAATACAGTTGGGAAGAATTGCGCAACATCACATTCCTTTTCTTTGGAGAGAAT
CCAGTGGAATGAGGACTTGAGCGGCGGCATCTCCAATCTCACTGGAAGATGCCACTTTTAAGGAAAGAACTCGCACAAAG
GAAGATATGAAGAGTGAACTCGTTGTTCCATTTCCNTTCAGCTCACCAACCCGGTTTGGAGTTGGAGGCCAGGTCCAAGA
TAGTTTAGTAAGAAAGAAAAGTAGGTTGAAAGCTCCAAAATGAAAAGCTAGAATTATTCCAGGGTTTCAACTGTTGCTTT
TTCGAGCCATATCACACAGGAACAATTGTACGTGAAATATAAGTAGGANNCAGTTTTGGCCAGTGTGATCAAATAATTCA
ACCGGTGGTAATAACGGGCACTTCGTGTTTTGTAAATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis