Browse Element(s) Details


Os.18109.1.S1_at

Description gb:AK070826.1
DB_XREF= gi:32980849
TID=Os.18109.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0029C15.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064K14, full insert sequence.
FL= gb:AK070826.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3442011/11LysM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34390Os.46063.1.S1_at11/1110+18003257..18010180Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g34400Os.11918.1.S1_at11/1110+18013400..18022397expressed protein
LOC_Os10g34420Os.18109.1.S1_at11/1110+18027729..18030287LysM domain containing protein, expressed
LOC_Os10g34430OsAffx.8007.1.S1_at11/1110+18030878..18043143Type III restriction enzyme, res subunit family protein, expressed
LOC_Os10g34440OsAffx.20238.1.S1_at10/1110+18045989..18048248expressed protein
LOC_Os10g34450OsAffx.6862.1.S1_at11/1110+18052713..18053692hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016998biological_processcell wall catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18109.1.S1_at--670--1491Chr10:18029713..18029737 (25 bp)
AGCACTCCGGAGTTCCAAGAGCCAG
LOC_Os10g34420
Os.18109.1.S1_at--651--5811Chr10:18029787..18029811 (25 bp)
GACCTTAAAACCAGACGCTTTCACT
LOC_Os10g34420
Os.18109.1.S1_at--31--5631Chr10:18029836..18029860 (25 bp)
GACAACATTCCAAAGCCAATCGCTG
LOC_Os10g34420
Os.18109.1.S1_at--698--4891Chr10:18029892..18029916 (25 bp)
GCTTATAGTCTCTTGGTTTTGCACA
LOC_Os10g34420
Os.18109.1.S1_at--880--7871Chr10:18029906..18029930 (25 bp)
GGTTTTGCACAACTCCTGTTCTAAA
LOC_Os10g34420
Os.18109.1.S1_at--884--10611Chr10:18029962..18029986 (25 bp)
TTCGGTTGACAACAGCTCTTCTGAG
LOC_Os10g34420
Os.18109.1.S1_at--108--6171Chr10:18030003..18030027 (25 bp)
GAGGACCTTGTGGACCTTGGTTACT
LOC_Os10g34420
Os.18109.1.S1_at--105--10571Chr10:18030027..18030051 (25 bp)
TTCTTCCTGGGTGGCTGGAGCACAA
LOC_Os10g34420
Os.18109.1.S1_at--1030--6531Chr10:18030084..18030108 (25 bp)
GATTAGCTTCTGTTTTATGGTTCCC
LOC_Os10g34420
Os.18109.1.S1_at--211--4071Chr10:18030132..18030156 (25 bp)
CGAGTAGCAGCATCAGTTTCTTCAG
LOC_Os10g34420
Os.18109.1.S1_at--38--10051Chr10:18030165..18030189 (25 bp)
TAGATGACACAGAGCCTTGGATACT
LOC_Os10g34420
Target Sequence 
AGCACTCCGGAGTTCCAAGAGCCAGAGAGCAACAGCAGCAGCACCAGTTCCTCCATATGGTCGACAAGCAAGTGGACCTT
AAAACCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGACAACATTCCAAAGCCAATCGCTGCTTGGAGAAACA
AGGCGGCTCGAGATTAGTAGCTTATAGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCACCCCC
CGGAGGAGCTTCGGTTGACAACAGCTCTTCTGAGAGNTGGAAGCAGAGCAGAGGACCTTGTGGACCTTGGTTACTTCTTC
CTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGGTTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGT
TATATTGGAGATGTTGCAACGAGTAGCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis