Browse Element(s) Details


OsAffx.20238.1.S1_at

Description tigr:9638.m03032
TID=OsAffx.20238.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3444010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34400Os.11918.1.S1_at11/1110+18013400..18022397expressed protein
LOC_Os10g34420Os.18109.1.S1_at11/1110+18027729..18030287LysM domain containing protein, expressed
LOC_Os10g34430OsAffx.8007.1.S1_at11/1110+18030878..18043143Type III restriction enzyme, res subunit family protein, expressed
LOC_Os10g34440OsAffx.20238.1.S1_at10/1110+18045989..18048248expressed protein
LOC_Os10g34450OsAffx.6862.1.S1_at11/1110+18052713..18053692hypothetical protein
LOC_Os10g34470Os.54752.1.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.2.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.4.S1_s_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34480Os.10785.3.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34480OsAffx.30670.1.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34490OsAffx.25492.1.S1_at11/1110+18072612..18073671hypothetical protein
LOC_Os10g34490OsAffx.19217.1.S1_x_at3/1110+18072612..18073671hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20238.1.S1_at--466--5031Chr10:18047824..18047845 (22 bp)
GCAGCTTACTACTCCCCAAGGTGGG
LOC_Os10g34440
OsAffx.20238.1.S1_at--31--9911NONE
TACTCCCCAAGGTGGGCAGCTTCGC
NONE
OsAffx.20238.1.S1_at--106--2691Chr10:18046472..18046496 (25 bp)
AAGCGGAAGCAAGTCGCTGCCGCAG
LOC_Os10g34440
OsAffx.20238.1.S1_at--865--5791Chr10:18046408..18046432 (25 bp)
GACGCTGCAGCACCGGCCAAAGAGA
LOC_Os10g34440
OsAffx.20238.1.S1_at--995--5351Chr10:18046325..18046349 (25 bp)
GAAGAGAGCTCCGTCGAGAAGGCAC
LOC_Os10g34440
OsAffx.20238.1.S1_at--235--1371Chr10:18046321..18046345 (25 bp)
AGAGCTCCGTCGAGAAGGCACGGCT
LOC_Os10g34440
OsAffx.20238.1.S1_at--421--5291Chr10:18046308..18046332 (25 bp)
GAAGGCACGGCTCGTTCCGGCGCGA
LOC_Os10g34440
OsAffx.20238.1.S1_at--1100--8351Chr10:18046258..18046282 (25 bp)
GGCGGGCTGTGGACGATGGCGACCA
LOC_Os10g34440
OsAffx.20238.1.S1_at--716--8471Chr10:18046242..18046266 (25 bp)
TGGCGACCACGCTGGGAGTGATCGT
LOC_Os10g34440
OsAffx.20238.1.S1_at--532--8031Chr10:18046228..18046252 (25 bp)
GGAGTGATCGTGTTCTTCGGCCGCG
LOC_Os10g34440
OsAffx.20238.1.S1_at--106--4811Chr10:18046182..18046206 (25 bp)
GCTCGTGCCTGTACGCCGCGCGGTT
LOC_Os10g34440
Target Sequence 
GCAGCTTACTACTCCCCAAGGTGGGCAGCTTCGCCGCCGACGGCGGCAAGAAGCAGAGGAAAAGCGGAAGCAAGTCGCTG
CCGCAGCAGACGGTCACCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGCTGCAGCACCGGCCAAAGAGACGGCGCCGCC
TGCCTGGCAACCGTGCCCGAGGCCGGCGCCCGGCGAGCTGGCCGGCGTGAAGAGAGCTCCGTCGAGAAGGCACGGCTCGT
TCCGGCGCGAGCCGGGCGGCGGCGGCGGCGGCGGGGGCGGGCTGTGGACGATGGCGACCACGCTGGGAGTGATCGTGTTC
TTCGGCCGCGTCACCGCGGTGGCCTTCCTCTGCTCGTGCCTGTACGCCGCGCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis