Browse Element(s) Details


OsAffx.6862.1.S1_at

Description tigr:9638.m03033
TID=OsAffx.6862.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3445011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34420Os.18109.1.S1_at11/1110+18027729..18030287LysM domain containing protein, expressed
LOC_Os10g34430OsAffx.8007.1.S1_at11/1110+18030878..18043143Type III restriction enzyme, res subunit family protein, expressed
LOC_Os10g34440OsAffx.20238.1.S1_at10/1110+18045989..18048248expressed protein
LOC_Os10g34450OsAffx.6862.1.S1_at11/1110+18052713..18053692hypothetical protein
LOC_Os10g34470Os.54752.1.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.2.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.4.S1_s_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34480Os.10785.3.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34480OsAffx.30670.1.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34490OsAffx.25492.1.S1_at11/1110+18072612..18073671hypothetical protein
LOC_Os10g34490OsAffx.19217.1.S1_x_at3/1110+18072612..18073671hypothetical protein
LOC_Os10g34500Os.46659.1.S1_at11/1110+18074647..18078245expressed protein
LOC_Os10g34500Os.46659.1.S1_x_at10/1110+18074647..18078245expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6862.1.S1_at--893--8711Chr10:18053409..18053433 (25 bp)
TGTCGTCGTGCGTGCCTGGACTACT
LOC_Os10g34450
OsAffx.6862.1.S1_at--76--9151Chr10:18053405..18053425 (21 bp)
TGCGTGCCTGGACTACTCAAGCGTA
LOC_Os10g34450
OsAffx.6862.1.S1_at--654--9171Chr10:18053233..18053421 (25 bp)
TGCCTGGACTACTCAAGCGTAATGT
LOC_Os10g34450
OsAffx.6862.1.S1_at--927--5691Chr10:18053227..18053415 (25 bp)
GACTACTCAAGCGTAATGTCAGGAG
LOC_Os10g34450
OsAffx.6862.1.S1_at--1044--7051Chr10:18053215..18053239 (25 bp)
GTAATGTCAGGAGAAACAGCAACAG
LOC_Os10g34450
OsAffx.6862.1.S1_at--442--4471Chr10:18053021..18053045 (25 bp)
GCCGAGACGGCCGAATCAAAAGGCG
LOC_Os10g34450
OsAffx.6862.1.S1_at--393--4491Chr10:18053012..18053036 (25 bp)
GCCGAATCAAAAGGCGACGTCGTCG
LOC_Os10g34450
OsAffx.6862.1.S1_at--289--8651Chr10:18052871..18052895 (25 bp)
TGGGCCGTCGTCTGCGTGTGCGCGT
LOC_Os10g34450
OsAffx.6862.1.S1_at--1011--9331Chr10:18052843..18052867 (25 bp)
TCGCCGCGGTGTACGGGCTCCAGCT
LOC_Os10g34450
OsAffx.6862.1.S1_at--1087--7171Chr10:18052763..18052787 (25 bp)
GTCGGCGACGTGAACTCGAAGGATT
LOC_Os10g34450
OsAffx.6862.1.S1_at--461--4111Chr10:18052747..18052771 (25 bp)
CGAAGGATTACAAGAAGCTGGTTGT
LOC_Os10g34450
Target Sequence 
TGTCGTCGTGCGTGCCTGGACTACTCAAGCGTAATGTCAGGAGAAACAGCAACAGCAGCAACGACGTCCATGGCGGGCAG
CGGCAGCAGCACGAGCCCACCGCGCCGCCACTGCCGCGACCGGCCGAGCTGCCGCCGCCACCGCCACCGCCTCGACGACG
CCACGACGTCGTCGCTCCGGCCACGACGCGCGGCGCCGGCGCCGGCGCCGGCGCCATCGCCGACGCCGAGACGGCCGAAT
CAAAAGGCGACGTCGTCGTCGTGGCGAGCTCGCGCGAACGCGCGAGCAGCTGCGGCCACGGCGAGTTCGGGCCGGCGATG
GGGGTGTGCGTGGTGGCGGCGGTGTCGATGGCGGGGCTGCTCGGCGGCCGGCTCTGGGCCGTCGTCTGCGTGTGCGCGTG
GCTCGCCGCGGTGTACGGGCTCCAGCTCAATCGGCGCCGGGCGAAGCCGCCGCCGGCGGCTGACGGCGGAGGCGAGGAGG
TCGTCGGCGACGTGAACTCGAAGGATTACAAGAAGCTGGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis