Browse Element(s) Details


Os.46660.1.S1_x_at

Description gb:CB680887
DB_XREF= gi:29684612
DB_XREF=OSJNEf06G10.r
CLONE=OSJNEf06G10
TID=Os.46660.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0029C15.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3437011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34290Os.54089.2.S1_at1/1110+17961030..17964570retrotransposon protein, putative, unclassified
LOC_Os10g34300OsAffx.30667.1.S1_at11/1110+17965074..17967592F-box domain containing protein
LOC_Os10g34310Os.24902.1.S1_at9/1110+17968231..17970513Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g34320Os.54931.1.S2_at11/1110+17971833..17975139expressed protein
LOC_Os10g34320Os.54931.1.S1_at11/1110+17971833..17975139expressed protein
LOC_Os10g34330OsAffx.30668.1.S1_at10/1110+17975392..17977020hypothetical protein
LOC_Os10g34340OsAffx.30669.1.S1_at11/1110+17979450..17981818F-box domain containing protein
LOC_Os10g34350Os.27128.1.A1_a_at11/1110+17982248..17984720aminotransferase, classes I and II family protein, expressed
LOC_Os10g34360Os.168.1.S1_at11/1110+17986723..17989063Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os10g34370Os.46660.1.S1_x_at11/1110+17989365..17990845expressed protein
LOC_Os10g34380Os.23309.1.S1_a_at11/1110+17991518..18002175FF domain containing protein, expressed
LOC_Os10g34390Os.46063.1.S1_at11/1110+18003257..18010180Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g34400Os.11918.1.S1_at11/1110+18013400..18022397expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46660.1.S1_x_at--1138--1731Chr10:17989941..17989965 (25 bp)
ACCTTACGTACAATGCGCTTGTGCA
LOC_Os10g34370
Os.46660.1.S1_x_at--977--7811Chr10:17989890..17989914 (25 bp)
GGTCAGCCATGCGTGTGTTCAAGAG
LOC_Os10g34370
Os.46660.1.S1_x_at--503--2071Chr10:17989830..17989854 (25 bp)
ACTTGGGTGTGTCAGCGCATTCGCA
LOC_Os10g34370
Os.46660.1.S1_x_at--152--931Chr10:17989765..17989789 (25 bp)
AGGCTTGATGATGCTCTATGGATTT
LOC_Os10g34370
Os.46660.1.S1_x_at--241--4891Chr10:17989731..17989755 (25 bp)
GCTTTGCGATGAAGGCAGCACCACC
LOC_Os10g34370
Os.46660.1.S1_x_at--417--1511Chr10:17989715..17989739 (25 bp)
AGCACCACCCTTTGAGGCAGTCAAG
LOC_Os10g34370
Os.46660.1.S1_x_at--258--6291Chr10:17989642..17989666 (25 bp)
GATGTTGTCGCCAAGATGAACCTTC
LOC_Os10g34370
Os.46660.1.S1_x_at--349--6591Chr10:17989583..17989607 (25 bp)
GATTGCTGGTGAATTGTCCCTTGAA
LOC_Os10g34370
Os.46660.1.S1_x_at--490--8171Chr10:17989558..17989582 (25 bp)
GGAACACCTAGTTCAAATCCATGAT
LOC_Os10g34370
Os.46660.1.S1_x_at--106--6931Chr10:17989520..17989544 (25 bp)
GTATGTCACTGTGTCACTTCTGATA
LOC_Os10g34370
Os.46660.1.S1_x_at--238--3071Chr10:17989494..17989518 (25 bp)
AATCATATGTTTTGGCCCTTGAATA
LOC_Os10g34370
Target Sequence 
ACCTTACGTACAATGCGCTTGTGCAGGGGTACTGCAAGGAGGGGAATGTTGGGTCAGCCATGCGTGTGTTCAAGAGGATG
AAAGTGATGAANAGGAGGGAGGNTAGGAGTGACTTGGGTGTGTCAGCGCATTCGCAAACATATGTGGNGCTGTTCAGGAG
CTTGGTGGAGAAAGAGAGGCTTGATGATGCTCTATGGATTTGTAAGAGCTGCTTTGCGATGAAGGCAGCACCACCCTTTG
AGGCAGTCAAGGGTTTGGTTGAGGGATTGGTGAAGGGTGGGAAATCTGCAGAGGCAAAGGATGTTGTCGCCAAGATGAAC
CTTCTTGTGAAAGGTGATGCTAAAGTGGCTTGGGAGAAGATTGCTGGTGAATTGTCCCTTGAAGGAACACCTAGTTCAAA
TCCATGATNTGCTTGNNGAANGTATGTCACTGTGTCACTTCTGATAAAATCATATGTTTTGGCCCTTGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46660.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis