Browse Element(s) Details


OsAffx.30668.1.S1_at

Description tigr:9638.m03020
TID=OsAffx.30668.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3433010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34260OsAffx.30146.1.S1_s_at11/1110+17952008..17952761hypothetical protein
LOC_Os10g34260OsAffx.30146.2.S1_x_at8/1110+17952008..17952761hypothetical protein
LOC_Os10g34270Os.46661.1.S1_s_at11/1110+17955861..17956823expressed protein
LOC_Os10g34280OsAffx.30666.1.S1_at10/1110+17958467..17958872hypothetical protein
LOC_Os10g34280OsAffx.30666.1.S1_x_at10/1110+17958467..17958872hypothetical protein
LOC_Os10g34280OsAffx.30667.1.S1_at1/1110+17958467..17958872hypothetical protein
LOC_Os10g34290Os.54089.2.S1_at1/1110+17961030..17964570retrotransposon protein, putative, unclassified
LOC_Os10g34300OsAffx.30667.1.S1_at11/1110+17965074..17967592F-box domain containing protein
LOC_Os10g34310Os.24902.1.S1_at9/1110+17968231..17970513Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g34320Os.54931.1.S2_at11/1110+17971833..17975139expressed protein
LOC_Os10g34320Os.54931.1.S1_at11/1110+17971833..17975139expressed protein
LOC_Os10g34330OsAffx.30668.1.S1_at10/1110+17975392..17977020hypothetical protein
LOC_Os10g34340OsAffx.30669.1.S1_at11/1110+17979450..17981818F-box domain containing protein
LOC_Os10g34350Os.27128.1.A1_a_at11/1110+17982248..17984720aminotransferase, classes I and II family protein, expressed
LOC_Os10g34360Os.168.1.S1_at11/1110+17986723..17989063Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os10g34370Os.46660.1.S1_x_at11/1110+17989365..17990845expressed protein
LOC_Os10g34380Os.23309.1.S1_a_at11/1110+17991518..18002175FF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30668.1.S1_at--591--1831Chr10:17975484..17975508 (25 bp)
ACGCAGGGATTCCATCGGCATCGAT
LOC_Os10g34330
OsAffx.30668.1.S1_at--193--7811Chr10:17975520..17975544 (25 bp)
GGTCGGCGTCCAAGACAGGCGTCTT
LOC_Os10g34330
OsAffx.30668.1.S1_at--1003--9551Chr10:17975541..17975565 (25 bp)
TCTTCGTGCGGTCGTTCGTCCAAGA
LOC_Os10g34330
OsAffx.30668.1.S1_at--570--6711Chr10:17975554..17975578 (25 bp)
GTTCGTCCAAGAGCCGTCAAGTTTC
LOC_Os10g34330
OsAffx.30668.1.S1_at--680--1671Chr10:17975595..17975619 (25 bp)
AGCCGAGCAAGCACGATGCAAGGGA
LOC_Os10g34330
OsAffx.30668.1.S1_at--374--6131Chr10:17975618..17975928 (25 bp)
GAGGGAACGACAGGCCACCAATGGT
LOC_Os10g34330
OsAffx.30668.1.S1_at--329--8191Chr10:17975941..17975965 (25 bp)
GGAAGATGGTGACAATGCCAATCCA
LOC_Os10g34330
OsAffx.30668.1.S1_at--620--751Chr10:17975991..17976015 (25 bp)
ATGTCAGCCTCGGTGTGGTACTTGC
LOC_Os10g34330
OsAffx.30668.1.S1_at--786--1531NONE
AGCATGTGCCCAGGTGTCCACGTCA
NONE
OsAffx.30668.1.S1_at--656--3651Chr10:17976760..17976784 (25 bp)
CTTCTCGAGGTCAGCTGGTCAGGGT
LOC_Os10g34330
OsAffx.30668.1.S1_at--297--471Chr10:17976898..17976922 (25 bp)
ATCTCCTGCGTGGTCGAGCTATGTC
LOC_Os10g34330
Target Sequence 
ACGCAGGGATTCCATCGGCATCGATGTCAGTGGCAGGGTCGGCGTCCAAGACAGGCGTCTTCGTGCGGTCGTTCGTCCAA
GAGCCGTCAAGTTTCGGGGAGGAGGACGCGAAGCCGAGCAAGCACGATGCAAGGGAGGGAACGACAGGCCACCAATGGTG
GAGCACATAGAGGAAGATGGTGACAATGCCAATCCAGGAGTGAAGCAAGTAGAGGTTGGGGATGTCAGCCTCGGTGTGGT
ACTTGCACACAGCATAGATGCTGAGGCCGCCGAGGGCGAGGGCGAGGGCGACGGCGTGCAGCAGCATGTGCCCAGGTGTC
CACGTCAGCACCTTCTCGAGGTCAGCTGGTCAGGGTGTCCGCCGACGCTCTCTTCGTCCCCGTCCCCGTTCTCGTCCGCT
GGCCGCACGCTCCCGCTCCTCCTCTTCCTCGCGGCTCGCGGCCTCGCCTTCCTCTACCCATTCGTGCCCATCTCCTGCGT
GGTCGAGCTATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis