Browse Element(s) Details


Os.168.1.S1_at

Description gb:D50576.1
DB_XREF= gi:2645169
TID=Os.168.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.168 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for YY2 protein, complete cds.
PROD=YY2 protein
FL= gb:AB110182.1 gb:D50576.1 gb:AK105510.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3436011/11Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34290Os.54089.2.S1_at1/1110+17961030..17964570retrotransposon protein, putative, unclassified
LOC_Os10g34300OsAffx.30667.1.S1_at11/1110+17965074..17967592F-box domain containing protein
LOC_Os10g34310Os.24902.1.S1_at9/1110+17968231..17970513Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g34320Os.54931.1.S2_at11/1110+17971833..17975139expressed protein
LOC_Os10g34320Os.54931.1.S1_at11/1110+17971833..17975139expressed protein
LOC_Os10g34330OsAffx.30668.1.S1_at10/1110+17975392..17977020hypothetical protein
LOC_Os10g34340OsAffx.30669.1.S1_at11/1110+17979450..17981818F-box domain containing protein
LOC_Os10g34350Os.27128.1.A1_a_at11/1110+17982248..17984720aminotransferase, classes I and II family protein, expressed
LOC_Os10g34360Os.168.1.S1_at11/1110+17986723..17989063Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os10g34370Os.46660.1.S1_x_at11/1110+17989365..17990845expressed protein
LOC_Os10g34380Os.23309.1.S1_a_at11/1110+17991518..18002175FF domain containing protein, expressed
LOC_Os10g34390Os.46063.1.S1_at11/1110+18003257..18010180Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g34400Os.11918.1.S1_at11/1110+18013400..18022397expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.168.1.S1_at--735--7671Chr10:17988476..17988500 (25 bp)
GGGTTCTGCAGGACACTCATGGATC
LOC_Os10g34360
Os.168.1.S1_at--875--10211Chr10:17988528..17988552 (25 bp)
TATTCTGGGCTGTGCATCCTGGTGG
LOC_Os10g34360
Os.168.1.S1_at--1131--8591Chr10:17988550..17988574 (25 bp)
TGGTCCAGCAATACTGAACAGGCTA
LOC_Os10g34360
Os.168.1.S1_at--338--10291Chr10:17988579..17988603 (25 bp)
TTTGCCTTGAACTCCAGCCAGAGAA
LOC_Os10g34360
Os.168.1.S1_at--42--8691Chr10:17988643..17988667 (25 bp)
TGTGAGCAGCAACACCGTCTTCTAT
LOC_Os10g34360
Os.168.1.S1_at--830--1771Chr10:17988656..17988680 (25 bp)
ACCGTCTTCTATGTGTTGGAGTATT
LOC_Os10g34360
Os.168.1.S1_at--673--7631Chr10:17988721..17988745 (25 bp)
GGGACTGATCTTGGCTTTTGGCCCA
LOC_Os10g34360
Os.168.1.S1_at--718--10231Chr10:17988737..17988761 (25 bp)
TTTGGCCCAGGCATCACATTTGAAG
LOC_Os10g34360
Os.168.1.S1_at--407--7711Chr10:17988797..17988821 (25 bp)
GGGTCCAAGAAGACTTTCAGCTAGA
LOC_Os10g34360
Os.168.1.S1_at--1033--5231Chr10:17988827..17988851 (25 bp)
GAATCACAAACATACCATTTCCAGG
LOC_Os10g34360
Os.168.1.S1_at--407--5651Chr10:17988903..17988927 (25 bp)
GACAGCATCTGTGCACTACATAGTT
LOC_Os10g34360
Target Sequence 
GGGTTCTGCAGGACACTCATGGATCGGGTTGGGATAAAGGAGTTCAATGATGTATTCTGGGCTGTGCATCCTGGTGGTCC
AGCAATACTGAACAGGCTAGAGGTTTGCCTTGAACTCCAGCCAGAGAAGCTCAAGATCAGTAGAAAGGCCCTGATGAACT
ATGGTAATGTGAGCAGCAACACCGTCTTCTATGTGTTGGAGTATTTGAGGGATGAGTTGAAGAAAGGGATGATAAGGGAA
GAATGGGGACTGATCTTGGCTTTTGGCCCAGGCATCACATTTGAAGGAATGCTAGTTCGAGGCATTAACTGAGACTGAAA
GGGGTCCAAGAAGACTTTCAGCTAGATGGAAGAATCACAAACATACCATTTCCAGGTTAAGTATATAGTATGAACTTGAA
ACATCTCATAAGGAGCATAGATGTCTTGACAGCATCTGTGCACTACATAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis